Variant information

Chr09:31016241 - 31020423

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
31016771GC391577.771.00DOWNSTREAM(|4245||None|Vigan.09G168400.01), DOWNSTREAM(|4361||None|Vigan.09G168100.01), UTR_3_PRIME(|413||None|Vigan.09G168300.01), UTR_5_PRIME(|38||None|Vigan.09G168200.01)Vigna nepalensis
31017159AT652699.771.00DOWNSTREAM(|3857||None|Vigan.09G168400.01), DOWNSTREAM(|4749||None|Vigan.09G168100.01), INTRON(|||None|Vigan.09G168200.01), UTR_3_PRIME(|25||None|Vigan.09G168300.01)Vigna nepalensis
31017465TA60208.770.17DOWNSTREAM(|3551||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), STOP_GAINED(NONSENSE|Aaa/Taa|K7*|None|Vigan.09G168300.01)Vigna nepalensis
31017487GA81624.770.25DOWNSTREAM(|3529||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UTR_5_PRIME(|4||None|Vigan.09G168300.01)Vigna nepalensis
31017490AC82663.770.26DOWNSTREAM(|3526||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UTR_5_PRIME(|7||None|Vigan.09G168300.01)Vigna nepalensis
31017504TA83843.770.30DOWNSTREAM(|3512||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UTR_5_PRIME(|21||None|Vigan.09G168300.01)Vigna nepalensis
31017509AG86924.770.30DOWNSTREAM(|3507||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UTR_5_PRIME(|26||None|Vigan.09G168300.01)Vigna nepalensis
31017512AT881044.770.32DOWNSTREAM(|3504||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UTR_5_PRIME(|29||None|Vigan.09G168300.01)Vigna nepalensis
31017516CT901059.770.34DOWNSTREAM(|3500||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), START_GAINED(|||None|Vigan.09G168300.01), UTR_5_PRIME(|33||None|Vigan.09G168300.01)Vigna nepalensis
31017527CG981071.770.38DOWNSTREAM(|3489||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UTR_5_PRIME(|44||None|Vigan.09G168300.01)Vigna nepalensis
31017554GA991422.770.37DOWNSTREAM(|3462||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UTR_5_PRIME(|71||None|Vigan.09G168300.01)Vigna nepalensis
31017906GA661029.770.42DOWNSTREAM(|3110||None|Vigan.09G168400.01), NON_SYNONYMOUS_CODING(MISSENSE|cGt/cAt|R116H|None|Vigan.09G168200.01), START_GAINED(|||None|Vigan.09G168300.01), UTR_5_PRIME(|423||None|Vigan.09G168300.01)Vigna nepalensis
31017914GA701164.770.47DOWNSTREAM(|3102||None|Vigan.09G168400.01), NON_SYNONYMOUS_CODING(MISSENSE|Gag/Aag|E119K|None|Vigan.09G168200.01), UTR_5_PRIME(|431||None|Vigan.09G168300.01)Vigna nepalensis
31018322CG642681.771.00DOWNSTREAM(|2694||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UPSTREAM(|221||None|Vigan.09G168300.01)Vigna nepalensis
31018597CT542239.771.00DOWNSTREAM(|2419||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UPSTREAM(|496||None|Vigan.09G168300.01)Vigna nepalensis
31018752AT592458.771.00DOWNSTREAM(|2264||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UPSTREAM(|651||None|Vigan.09G168300.01)Vigna nepalensis
31018809TC552197.771.00DOWNSTREAM(|2207||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UPSTREAM(|708||None|Vigan.09G168300.01)Vigna nepalensis
31018875AT562170.771.00DOWNSTREAM(|2141||None|Vigan.09G168400.01), INTRON(|||None|Vigan.09G168200.01), UPSTREAM(|774||None|Vigan.09G168300.01)Vigna nepalensis
31019323AG662513.771.00DOWNSTREAM(|1693||None|Vigan.09G168400.01), NON_SYNONYMOUS_CODING(MISSENSE|Att/Gtt|I240V|None|Vigan.09G168200.01), UPSTREAM(|1222||None|Vigan.09G168300.01)Vigna nepalensis
31019974AC532117.771.00DOWNSTREAM(|1042||None|Vigan.09G168400.01), UPSTREAM(|1873||None|Vigan.09G168300.01), UTR_3_PRIME(|49||None|Vigan.09G168200.01)Vigna nepalensis
31020044AC512336.771.00DOWNSTREAM(|972||None|Vigan.09G168400.01), UPSTREAM(|1943||None|Vigan.09G168300.01), UTR_3_PRIME(|119||None|Vigan.09G168200.01)Vigna nepalensis
31020048TA532333.771.00DOWNSTREAM(|968||None|Vigan.09G168400.01), UPSTREAM(|1947||None|Vigan.09G168300.01), UTR_3_PRIME(|123||None|Vigan.09G168200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
31016542TTAT351348.731.00DOWNSTREAM(|4133||None|Vigan.09G168100.01), DOWNSTREAM(|4473||None|Vigan.09G168400.01), DOWNSTREAM(|78||None|Vigan.09G168300.01), UTR_5_PRIME(|265||None|Vigan.09G168200.01)Vigna nepalensis
31016556GTG351031.731.00DOWNSTREAM(|4147||None|Vigan.09G168100.01), DOWNSTREAM(|4459||None|Vigan.09G168400.01), DOWNSTREAM(|64||None|Vigan.09G168300.01), UTR_5_PRIME(|252||None|Vigan.09G168200.01)Vigna nepalensis
31017459AAG58147.730.14DOWNSTREAM(|3556||None|Vigan.09G168400.01), FRAME_SHIFT(|aaa/aaaC|K8K?|None|Vigan.09G168300.01), INTRON(|||None|Vigan.09G168200.01)Vigna nepalensis