Variant information

Chr09:27404806 - 27406899

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
27404918GT592354.771.00UPSTREAM(|246||None|Vigan.09G141800.01), UPSTREAM(|3120||None|Vigan.09G142000.01), UTR_5_PRIME(|4||None|Vigan.09G141900.01)Vigna nepalensis
27405163GA582348.771.00INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|2875||None|Vigan.09G142000.01), UPSTREAM(|491||None|Vigan.09G141800.01)Vigna nepalensis
27405274TG632441.771.00INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|2764||None|Vigan.09G142000.01), UPSTREAM(|602||None|Vigan.09G141800.01)Vigna nepalensis
27405672CT431821.771.00INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|1000||None|Vigan.09G141800.01), UPSTREAM(|2366||None|Vigan.09G142000.01)Vigna nepalensis
27405959AT552157.771.00INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|1287||None|Vigan.09G141800.01), UPSTREAM(|2079||None|Vigan.09G142000.01)Vigna nepalensis
27406040TG732890.771.00INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|1368||None|Vigan.09G141800.01), UPSTREAM(|1998||None|Vigan.09G142000.01)Vigna nepalensis
27406051AT712837.771.00INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|1379||None|Vigan.09G141800.01), UPSTREAM(|1987||None|Vigan.09G142000.01)Vigna nepalensis
27406112AT753042.771.00INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|1440||None|Vigan.09G141800.01), UPSTREAM(|1926||None|Vigan.09G142000.01)Vigna nepalensis
27406594TC351506.771.00UPSTREAM(|1444||None|Vigan.09G142000.01), UPSTREAM(|1922||None|Vigan.09G141800.01), UTR_3_PRIME(|280||None|Vigan.09G141900.01)Vigna nepalensis
27406611TC341591.771.00UPSTREAM(|1427||None|Vigan.09G142000.01), UPSTREAM(|1939||None|Vigan.09G141800.01), UTR_3_PRIME(|297||None|Vigan.09G141900.01)Vigna nepalensis
27406615AC371726.771.00UPSTREAM(|1423||None|Vigan.09G142000.01), UPSTREAM(|1943||None|Vigan.09G141800.01), UTR_3_PRIME(|301||None|Vigan.09G141900.01)Vigna nepalensis
27406632GT381726.771.00UPSTREAM(|1406||None|Vigan.09G142000.01), UPSTREAM(|1960||None|Vigan.09G141800.01), UTR_3_PRIME(|318||None|Vigan.09G141900.01)Vigna nepalensis
27406646GA361628.771.00UPSTREAM(|1392||None|Vigan.09G142000.01), UPSTREAM(|1974||None|Vigan.09G141800.01), UTR_3_PRIME(|332||None|Vigan.09G141900.01)Vigna nepalensis
27406737TC441914.771.00UPSTREAM(|1301||None|Vigan.09G142000.01), UPSTREAM(|2065||None|Vigan.09G141800.01), UTR_3_PRIME(|423||None|Vigan.09G141900.01)Vigna nepalensis
27406740CA431890.771.00UPSTREAM(|1298||None|Vigan.09G142000.01), UPSTREAM(|2068||None|Vigan.09G141800.01), UTR_3_PRIME(|426||None|Vigan.09G141900.01)Vigna nepalensis
27406743AG421935.771.00UPSTREAM(|1295||None|Vigan.09G142000.01), UPSTREAM(|2071||None|Vigan.09G141800.01), UTR_3_PRIME(|429||None|Vigan.09G141900.01)Vigna nepalensis
27406768CA361710.771.00UPSTREAM(|1270||None|Vigan.09G142000.01), UPSTREAM(|2096||None|Vigan.09G141800.01), UTR_3_PRIME(|454||None|Vigan.09G141900.01)Vigna nepalensis
27406774TC371755.771.00UPSTREAM(|1264||None|Vigan.09G142000.01), UPSTREAM(|2102||None|Vigan.09G141800.01), UTR_3_PRIME(|460||None|Vigan.09G141900.01)Vigna nepalensis
27406781GA351665.771.00UPSTREAM(|1257||None|Vigan.09G142000.01), UPSTREAM(|2109||None|Vigan.09G141800.01), UTR_3_PRIME(|467||None|Vigan.09G141900.01)Vigna nepalensis
27406789TC351726.771.00UPSTREAM(|1249||None|Vigan.09G142000.01), UPSTREAM(|2117||None|Vigan.09G141800.01), UTR_3_PRIME(|475||None|Vigan.09G141900.01)Vigna nepalensis
27406812AG341578.771.00UPSTREAM(|1226||None|Vigan.09G142000.01), UPSTREAM(|2140||None|Vigan.09G141800.01), UTR_3_PRIME(|498||None|Vigan.09G141900.01)Vigna nepalensis
27406867TC482158.771.00UPSTREAM(|1171||None|Vigan.09G142000.01), UPSTREAM(|2195||None|Vigan.09G141800.01), UTR_3_PRIME(|553||None|Vigan.09G141900.01)Vigna nepalensis
27406876CT522269.771.00UPSTREAM(|1162||None|Vigan.09G142000.01), UPSTREAM(|2204||None|Vigan.09G141800.01), UTR_3_PRIME(|562||None|Vigan.09G141900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
27405795GGA461821.731.00INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|1124||None|Vigan.09G141800.01), UPSTREAM(|2242||None|Vigan.09G142000.01)Vigna nepalensis
27406828TCT361490.731.00UPSTREAM(|1209||None|Vigan.09G142000.01), UPSTREAM(|2157||None|Vigan.09G141800.01), UTR_3_PRIME(|515||None|Vigan.09G141900.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
27405506(AT)62(AT)14251035.730.96INTRON(|||None|Vigan.09G141900.01), UPSTREAM(|2531||None|Vigan.09G142000.01), UPSTREAM(|835||None|Vigan.09G141800.01)Vigna nepalensis