VIGGS:Variant information

Chr09:2721012 - 2726126

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
2721278	T	C	61	2470.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2721330	C	T	59	2335.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2721467	G	A	57	2244.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2721544	T	G	69	2704.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2721642	T	A	74	2920.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2721654	G	C	69	2696.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2721706	T	C	67	2736.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722002	A	G	56	2282.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722158	G	T	61	2433.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722456	T	G	79	3153.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722551	A	G	60	2461.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|cAa/cGa\|Q24R\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722648	C	T	68	2712.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722698	C	T	63	2789.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722707	G	A	64	2807.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722918	T	C	51	2053.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723085	T	C	81	3173.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723172	G	A	76	2987.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723298	G	A	76	2899.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723448	C	T	71	2759.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723620	C	T	55	2302.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723732	G	A	56	2251.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723784	T	C	65	2631.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2724092	G	C	81	3320.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2724147	G	C	68	2761.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2724260	C	A	62	2363.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2724778	T	G	52	2157.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2724910	C	T	55	2212.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2724936	A	G	56	2250.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2724986	A	C	48	1964.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2725221	T	A	64	2597.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2725375	A	G	50	2031.77	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2725592	G	A	56	2289.77	1.00	SYNONYMOUS_CODING(SILENT\|ccG/ccA\|P142\|None\|Vigan.09G024700.01)	Vigna nepalensis
2725975	A	C	64	2884.77	1.00	UTR_3_PRIME(\|308\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2725985	C	G	64	2841.77	1.00	UTR_3_PRIME(\|318\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2726061	T	A	61	2761.77	1.00	UTR_3_PRIME(\|394\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2726062	T	C	61	2761.77	1.00	UTR_3_PRIME(\|395\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2726064	T	C	62	2846.77	1.00	UTR_3_PRIME(\|397\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2726071	T	C	65	2881.77	1.00	UTR_3_PRIME(\|404\|\|None\|Vigan.09G024700.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
2722962	CT	C	61	2831.73	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722970	TAATATA	T	70	3145.73	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722978	TACTAATTCA	T	69	3148.73	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2722988	GGTTTTCCATTATCATAAC	G	68	3017.73	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723526	C	CACA	67	3001.73	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723811	T	TTG	69	3016.73	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2723890	G	GAATGGAGTAGAATGATTTTATGGAACATAATGT	41	2495.73	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2725134	T	TA	67	2470.73	1.00	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis
2725324	AT	A	42	1092.73	0.98	INTRON(\|\|\|None\|Vigan.09G024700.01)	Vigna nepalensis