Variant information

Chr09:12615770 - 12628795

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12616192GA652519.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12616394AG762930.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12616458GA732783.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12616762CT672635.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12616852GT813063.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617115AG722930.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617256AG552153.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617489TC582237.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617523GA492238.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617528GC502242.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617615GA491984.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617831TC532289.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617931TC471845.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617976GA401805.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617989CT371716.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12617995TC391694.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618052GA371475.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618103TC431872.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618124CG441951.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618127CG431951.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618161AG421688.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618283AG502282.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618293CT552467.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618307CT562269.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618352GA522112.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618373AG522086.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618427TC431755.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618459CT562451.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618469TG602750.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618487TA702971.770.99INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618519GA632577.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618660TG612679.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618672TC592705.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618715GT602584.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618743CT642581.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618829GA522313.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618833AG542422.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618950TC532282.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618959CG522318.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12619096CT411662.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12619617GA592269.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gca/Aca|A159T|None|Vigan.09G088600.01)Vigna nepalensis
12619819TA582295.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12619845GC652555.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12619856TA642558.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620090TG492042.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620169TG602481.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620183TA582654.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620193CA632781.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620268TA491998.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620324GC532215.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620525GC582687.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620527GC602687.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620692CG431608.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620827AC401747.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620838AG421886.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620843AG401816.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620945AG17627.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621016TA421872.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621076TA441631.770.95INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621110AC572262.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621177GC612331.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621252GA702934.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621350CG652615.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621379TA682692.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621407TC572304.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621644AG602491.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621688TA632518.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621757GA592347.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621785CA692757.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621852AG673004.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621872AT643015.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621879TA652823.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621921CG632778.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621943TC632765.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622019AT592415.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622156AC542227.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622236AG401802.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622259AG301454.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622283AT341469.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622374CA21898.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622383TC16735.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622401AC11511.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622414GA10410.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622501TA311155.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622604CG8300.781.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622618CT5131.940.80INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622666GT4152.031.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622684GT6224.841.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622721CT11463.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12622744TG10421.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12623043GA15511.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12623080AC8301.781.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12623381AC17588.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12623405AG15390.740.87INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624259CT6116.770.67INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624303TG2397.770.22INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624393GA1883.770.22INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624409CA,
G
13602.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624416TC1846.770.17INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624422GA1991.770.21INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624431AG22528.770.77INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624474TG271022.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624521CT25579.770.68INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624526TG22379.770.50INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624534GA22535.770.64INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624536GA2282.770.18INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624538GA23349.770.43INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624545CT25121.770.20INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624563GA2065.770.30INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624567TG18142.770.28INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624575GC19139.770.26INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624604CT22224.770.36INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624618TG28787.770.71INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624620GA28247.770.29INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624639GA41736.770.44INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624643AG49357.770.24INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624644CT51894.770.47INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624658AT69525.770.25INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624659GC68350.770.21INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624660CT691197.770.46INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624663CT69307.770.20INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624667AT711236.770.46INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624757AT67250.770.22INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624765CT64244.770.17INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624770CT61189.770.15INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624792CA52150.770.17INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624818AT35626.770.54INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624844GA16308.770.62INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624849AT12643.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624855TC10253.770.60INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624898CG10466.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624899GT11466.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624902AG11466.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624904AG11535.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12625901GT6109.770.67INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12625957GT7130.770.57INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12625976CT7130.770.57INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626079AG6331.781.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626111AG261021.770.96INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626187AC511784.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626215CT401712.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626217GA361712.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626237GA21961.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626244CT15691.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626269AT9376.781.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626284GA13427.770.85INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626287GA13427.770.85INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626448AG1464.770.21INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626450CT1264.770.25INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626455TC1170.770.18INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626510GA13478.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626573GA20576.770.90INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626620CA6148.780.83INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627184AT592577.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627198CT602672.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627407GA562268.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627493TG481979.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627513GT532380.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627522GA572512.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627560GA712827.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627597AT592260.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627709GT632354.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627801GC652526.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12628216TC662560.771.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12628330GA502044.771.00NON_SYNONYMOUS_CODING(MISSENSE|aGc/aAc|S212N|None|Vigan.09G088600.01)Vigna nepalensis
12628391GC471752.771.00SYNONYMOUS_CODING(SILENT|acG/acC|T232|None|Vigan.09G088600.01)Vigna nepalensis
12628502TC512087.771.00UTR_3_PRIME(|54||None|Vigan.09G088600.01)Vigna nepalensis
12628617AG441854.771.00UTR_3_PRIME(|169||None|Vigan.09G088600.01)Vigna nepalensis
12628641CT502202.771.00UTR_3_PRIME(|193||None|Vigan.09G088600.01)Vigna nepalensis
12628642TC502202.771.00UTR_3_PRIME(|194||None|Vigan.09G088600.01)Vigna nepalensis
12628725CT572523.771.00UTR_3_PRIME(|277||None|Vigan.09G088600.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12617754ATA431904.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618697AAT612817.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12618885CATTGTTAGAGTTC512242.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620004CCT401388.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620768CCAT381577.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12620897AAGCCTAATTCAACCTTATAAAATTGGCTTGTAAGATGATGTTTGCACTCCCTTATATACTACAAATTGGCCTTATCTC19714.060.95INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12621093TTC541970.730.96INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624351TAT27354.730.44INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624585AGTAATTTTTTA20169.730.30INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12624688ACA851554.730.49INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626092AAT177280.94INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626093AGCA19772.870.95INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626099AAG23907.750.96INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12626231CGC251132.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12627376CCAGTGTAACCGAAATGAGGATGTTGCAAATG573092.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12628134CTC582006.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis
12628716GGT502329.731.00UTR_3_PRIME(|269||None|Vigan.09G088600.01)Vigna nepalensis
12628765GTGACAACAAACCG622724.731.00UTR_3_PRIME(|318||None|Vigan.09G088600.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12617757(TA)33(TA)11441883.731.00INTRON(|||None|Vigan.09G088600.01)Vigna nepalensis