Variant information

Chr09:11620984 - 11624051

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
11621021AG642937.771.00DOWNSTREAM(|3504||None|Vigan.09G082900.01), START_GAINED(|||None|Vigan.09G082800.01), UTR_5_PRIME(|40||None|Vigan.09G082800.01)Vigna nepalensis
11621044TG743154.771.00DOWNSTREAM(|3481||None|Vigan.09G082900.01), UTR_5_PRIME(|17||None|Vigan.09G082800.01)Vigna nepalensis
11621267CA562236.771.00DOWNSTREAM(|3258||None|Vigan.09G082900.01), SYNONYMOUS_CODING(SILENT|ggC/ggA|G69|None|Vigan.09G082800.01)Vigna nepalensis
11621279GA502243.771.00DOWNSTREAM(|3246||None|Vigan.09G082900.01), SYNONYMOUS_CODING(SILENT|agG/agA|R73|None|Vigan.09G082800.01)Vigna nepalensis
11621281GA502243.771.00DOWNSTREAM(|3244||None|Vigan.09G082900.01), NON_SYNONYMOUS_CODING(MISSENSE|cGg/cAg|R74Q|None|Vigan.09G082800.01)Vigna nepalensis
11621298TC511943.771.00DOWNSTREAM(|3227||None|Vigan.09G082900.01), NON_SYNONYMOUS_CODING(MISSENSE|Tac/Cac|Y80H|None|Vigan.09G082800.01)Vigna nepalensis
11621312AG521995.771.00DOWNSTREAM(|3213||None|Vigan.09G082900.01), SYNONYMOUS_CODING(SILENT|gcA/gcG|A84|None|Vigan.09G082800.01)Vigna nepalensis
11621330TG521987.771.00DOWNSTREAM(|3195||None|Vigan.09G082900.01), SYNONYMOUS_CODING(SILENT|ggT/ggG|G90|None|Vigan.09G082800.01)Vigna nepalensis
11621381CT501910.771.00DOWNSTREAM(|3144||None|Vigan.09G082900.01), SYNONYMOUS_CODING(SILENT|gcC/gcT|A107|None|Vigan.09G082800.01)Vigna nepalensis
11621634CT562293.771.00DOWNSTREAM(|2891||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11621651TC592465.771.00DOWNSTREAM(|2874||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11621694AT672737.771.00DOWNSTREAM(|2831||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11621707CT713180.771.00DOWNSTREAM(|2818||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11621889TC562239.771.00DOWNSTREAM(|2636||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11621977AC471885.771.00DOWNSTREAM(|2548||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622062GA562396.771.00DOWNSTREAM(|2463||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622084GA542340.771.00DOWNSTREAM(|2441||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622195CG482266.771.00DOWNSTREAM(|2330||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622197TA482221.771.00DOWNSTREAM(|2328||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622267GA471891.771.00DOWNSTREAM(|2258||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622311GC491849.771.00DOWNSTREAM(|2214||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622483GA461890.771.00DOWNSTREAM(|2042||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622560TA441760.771.00DOWNSTREAM(|1965||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622633CA472131.771.00DOWNSTREAM(|1892||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622652GA461990.771.00DOWNSTREAM(|1873||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622678TA401633.771.00DOWNSTREAM(|1847||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622759TA562223.771.00DOWNSTREAM(|1766||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622854TA451243.771.00DOWNSTREAM(|1671||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622962AT572345.771.00DOWNSTREAM(|1563||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622973TG582378.771.00DOWNSTREAM(|1552||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11623108CT662506.771.00DOWNSTREAM(|1417||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11624041TG501965.771.00DOWNSTREAM(|484||None|Vigan.09G082900.01), UTR_3_PRIME(|187||None|Vigan.09G082800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
11621710AAT723168.731.00DOWNSTREAM(|2814||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11621827TTA561681.731.00DOWNSTREAM(|2697||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11621915TTA471327.731.00DOWNSTREAM(|2609||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622190AATGTTT482143.731.00DOWNSTREAM(|2334||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622192GGC462324.731.00DOWNSTREAM(|2332||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622198CCTTGT472257.731.00DOWNSTREAM(|2326||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622200AAAGTAGGGAGTGTAGT482437.731.00DOWNSTREAM(|2324||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis
11622616ACTA441942.731.00DOWNSTREAM(|1908||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
11622434(ATA)6(ATA)8411880.731.00DOWNSTREAM(|2090||None|Vigan.09G082900.01), INTRON(|||None|Vigan.09G082800.01)Vigna nepalensis