Variant information

Chr08:8347851 - 8350894

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 [SNPs] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
8348245CT321199.771.00DOWNSTREAM(|3067||None|Vigan.08G099200.01), DOWNSTREAM(|3832||None|Vigan.08G099300.01), SYNONYMOUS_CODING(SILENT|gcC/gcT|A107|None|Vigan.08G099100.01)Vigna nepalensis
8348412GA25115.770.20DOWNSTREAM(|2900||None|Vigan.08G099200.01), DOWNSTREAM(|3665||None|Vigan.08G099300.01), NON_SYNONYMOUS_CODING(MISSENSE|tGc/tAc|C163Y|None|Vigan.08G099100.01)Vigna nepalensis
8348414CT26112.770.19DOWNSTREAM(|2898||None|Vigan.08G099200.01), DOWNSTREAM(|3663||None|Vigan.08G099300.01), NON_SYNONYMOUS_CODING(MISSENSE|Cgt/Tgt|R164C|None|Vigan.08G099100.01)Vigna nepalensis
8348422CT27156.770.22DOWNSTREAM(|2890||None|Vigan.08G099200.01), DOWNSTREAM(|3655||None|Vigan.08G099300.01), SYNONYMOUS_CODING(SILENT|ctC/ctT|L166|None|Vigan.08G099100.01)Vigna nepalensis
8348460GA26119.770.19DOWNSTREAM(|2852||None|Vigan.08G099200.01), DOWNSTREAM(|3617||None|Vigan.08G099300.01), NON_SYNONYMOUS_CODING(MISSENSE|cGc/cAc|R179H|None|Vigan.08G099100.01)Vigna nepalensis
8348465GA24103.770.21DOWNSTREAM(|2847||None|Vigan.08G099200.01), DOWNSTREAM(|3612||None|Vigan.08G099300.01), NON_SYNONYMOUS_CODING(MISSENSE|Gca/Aca|A181T|None|Vigan.08G099100.01)Vigna nepalensis
8349534GC632465.771.00DOWNSTREAM(|1778||None|Vigan.08G099200.01), DOWNSTREAM(|2543||None|Vigan.08G099300.01), INTRON(|||None|Vigan.08G099100.01)Vigna nepalensis
8349925TG532070.770.98DOWNSTREAM(|1387||None|Vigan.08G099200.01), DOWNSTREAM(|2152||None|Vigan.08G099300.01), INTRON(|||None|Vigan.08G099100.01)Vigna nepalensis
8349966GA471879.771.00DOWNSTREAM(|1346||None|Vigan.08G099200.01), DOWNSTREAM(|2111||None|Vigan.08G099300.01), INTRON(|||None|Vigan.08G099100.01)Vigna nepalensis
8350019CT441769.771.00DOWNSTREAM(|1293||None|Vigan.08G099200.01), DOWNSTREAM(|2058||None|Vigan.08G099300.01), INTRON(|||None|Vigan.08G099100.01)Vigna nepalensis
8350480TA501799.771.00DOWNSTREAM(|1597||None|Vigan.08G099300.01), DOWNSTREAM(|832||None|Vigan.08G099200.01), SYNONYMOUS_CODING(SILENT|gcT/gcA|A516|None|Vigan.08G099100.01)Vigna nepalensis
8350729GA491969.771.00DOWNSTREAM(|1348||None|Vigan.08G099300.01), DOWNSTREAM(|583||None|Vigan.08G099200.01), UTR_3_PRIME(|231||None|Vigan.08G099100.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
8350758(AT)10(AT)6461990.731.00DOWNSTREAM(|1318||None|Vigan.08G099300.01), DOWNSTREAM(|553||None|Vigan.08G099200.01), UTR_3_PRIME(|261||None|Vigan.08G099100.01)Vigna nepalensis