Variant information

Chr08:45932193 - 45934921

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
45932269AG522041.771.00DOWNSTREAM(|2645||None|Vigan.08G360100.01), DOWNSTREAM(|4850||None|Vigan.08G360300.01), UPSTREAM(|171||None|Vigan.08G360000.01), UTR_5_PRIME(|694||None|Vigan.08G360200.01)Vigna nepalensis
45932320TG491927.771.00DOWNSTREAM(|2696||None|Vigan.08G360100.01), DOWNSTREAM(|4799||None|Vigan.08G360300.01), START_GAINED(|||None|Vigan.08G360200.01), UPSTREAM(|222||None|Vigan.08G360000.01), UTR_5_PRIME(|643||None|Vigan.08G360200.01)Vigna nepalensis
45932589TA552137.771.00DOWNSTREAM(|2965||None|Vigan.08G360100.01), DOWNSTREAM(|4530||None|Vigan.08G360300.01), UPSTREAM(|491||None|Vigan.08G360000.01), UTR_5_PRIME(|374||None|Vigan.08G360200.01)Vigna nepalensis
45932611TA682633.771.00DOWNSTREAM(|2987||None|Vigan.08G360100.01), DOWNSTREAM(|4508||None|Vigan.08G360300.01), UPSTREAM(|513||None|Vigan.08G360000.01), UTR_5_PRIME(|352||None|Vigan.08G360200.01)Vigna nepalensis
45932841TA512020.771.00DOWNSTREAM(|3217||None|Vigan.08G360100.01), DOWNSTREAM(|4278||None|Vigan.08G360300.01), UPSTREAM(|743||None|Vigan.08G360000.01), UTR_5_PRIME(|122||None|Vigan.08G360200.01)Vigna nepalensis
45933001AG582183.771.00DOWNSTREAM(|3377||None|Vigan.08G360100.01), DOWNSTREAM(|4118||None|Vigan.08G360300.01), SYNONYMOUS_CODING(SILENT|gtA/gtG|V13|None|Vigan.08G360200.01), UPSTREAM(|903||None|Vigan.08G360000.01)Vigna nepalensis
45933629AT592246.771.00DOWNSTREAM(|3490||None|Vigan.08G360300.01), DOWNSTREAM(|4005||None|Vigan.08G360100.01), NON_SYNONYMOUS_CODING(MISSENSE|Att/Ttt|I223F|None|Vigan.08G360200.01), UPSTREAM(|1531||None|Vigan.08G360000.01)Vigna nepalensis
45934064AG522282.771.00DOWNSTREAM(|3055||None|Vigan.08G360300.01), DOWNSTREAM(|4440||None|Vigan.08G360100.01), NON_SYNONYMOUS_CODING(MISSENSE|aAg/aGg|K342R|None|Vigan.08G360200.01), UPSTREAM(|1966||None|Vigan.08G360000.01)Vigna nepalensis
45934069TG492282.771.00DOWNSTREAM(|3050||None|Vigan.08G360300.01), DOWNSTREAM(|4445||None|Vigan.08G360100.01), NON_SYNONYMOUS_CODING(MISSENSE|Tca/Gca|S344A|None|Vigan.08G360200.01), UPSTREAM(|1971||None|Vigan.08G360000.01)Vigna nepalensis
45934131TA411769.771.00DOWNSTREAM(|2988||None|Vigan.08G360300.01), DOWNSTREAM(|4507||None|Vigan.08G360100.01), NON_SYNONYMOUS_CODING(MISSENSE|ttT/ttA|F364L|None|Vigan.08G360200.01), UPSTREAM(|2033||None|Vigan.08G360000.01)Vigna nepalensis
45934141TC401835.771.00DOWNSTREAM(|2978||None|Vigan.08G360300.01), DOWNSTREAM(|4517||None|Vigan.08G360100.01), NON_SYNONYMOUS_CODING(MISSENSE|Tac/Cac|Y368H|None|Vigan.08G360200.01), UPSTREAM(|2043||None|Vigan.08G360000.01)Vigna nepalensis
45934142AG411835.771.00DOWNSTREAM(|2977||None|Vigan.08G360300.01), DOWNSTREAM(|4518||None|Vigan.08G360100.01), NON_SYNONYMOUS_CODING(MISSENSE|tAc/tGc|Y368C|None|Vigan.08G360200.01), UPSTREAM(|2044||None|Vigan.08G360000.01)Vigna nepalensis
45934158CT401514.771.00DOWNSTREAM(|2961||None|Vigan.08G360300.01), DOWNSTREAM(|4534||None|Vigan.08G360100.01), SYNONYMOUS_CODING(SILENT|gcC/gcT|A373|None|Vigan.08G360200.01), UPSTREAM(|2060||None|Vigan.08G360000.01)Vigna nepalensis
45934191AG411664.771.00DOWNSTREAM(|2928||None|Vigan.08G360300.01), DOWNSTREAM(|4567||None|Vigan.08G360100.01), SYNONYMOUS_CODING(SILENT|gtA/gtG|V384|None|Vigan.08G360200.01), UPSTREAM(|2093||None|Vigan.08G360000.01)Vigna nepalensis
45934303TG572122.771.00DOWNSTREAM(|2816||None|Vigan.08G360300.01), DOWNSTREAM(|4679||None|Vigan.08G360100.01), NON_SYNONYMOUS_CODING(MISSENSE|Tcc/Gcc|S422A|None|Vigan.08G360200.01), UPSTREAM(|2205||None|Vigan.08G360000.01)Vigna nepalensis
45934575GC491902.771.00DOWNSTREAM(|2544||None|Vigan.08G360300.01), DOWNSTREAM(|4951||None|Vigan.08G360100.01), NON_SYNONYMOUS_CODING(MISSENSE|gaG/gaC|E512D|None|Vigan.08G360200.01), UPSTREAM(|2477||None|Vigan.08G360000.01)Vigna nepalensis
45934643GA471894.771.00DOWNSTREAM(|2476||None|Vigan.08G360300.01), NON_SYNONYMOUS_CODING(MISSENSE|cGt/cAt|R535H|None|Vigan.08G360200.01), UPSTREAM(|2545||None|Vigan.08G360000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
45932881TTTTA421926.731.00DOWNSTREAM(|3258||None|Vigan.08G360100.01), DOWNSTREAM(|4237||None|Vigan.08G360300.01), UPSTREAM(|784||None|Vigan.08G360000.01), UTR_5_PRIME(|81||None|Vigan.08G360200.01)Vigna nepalensis
45934598GTGCTGAG401763.731.00CODON_DELETION(|agtgctgat/agt|SAD520S|None|Vigan.08G360200.01), DOWNSTREAM(|2520||None|Vigan.08G360300.01), DOWNSTREAM(|4975||None|Vigan.08G360100.01), UPSTREAM(|2501||None|Vigan.08G360000.01)Vigna nepalensis