Variant information

Chr08:42310382 - 42314909

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
42311276AT552067.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311353CT692703.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311490TC663012.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311508CA703292.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311601GT562205.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311643AG481904.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311846AG622811.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311855AG672995.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312257TG421829.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312274AC442170.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312551CT401786.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312557CT391763.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312559TC391763.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312589TC441742.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312656CT532316.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312672CT532323.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312728AG512249.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312750TA552389.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312778CG522088.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312809AG542468.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313014CT461818.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313030AT491984.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313098GC602352.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313293TA562316.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313390GA451850.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313415AC542135.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313515GT532124.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313584CG612447.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313601GA602340.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313632GC612454.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313660TC713171.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313667GA683141.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313919CT642753.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313932TA602704.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314013AT441829.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314038GA391704.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314145AT692777.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314216AG572239.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314235AT552110.771.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314350GC56233.770.16INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314360AG62333.770.21INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314392GA82817.770.30INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314401GT78802.770.29INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314405GA77811.770.31INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314442CA751047.770.39SYNONYMOUS_CODING(SILENT|ctG/ctT|L107|None|Vigan.08G327200.01)Vigna nepalensis
42314443AT761041.770.38NON_SYNONYMOUS_CODING(MISSENSE|cTg/cAg|L107Q|None|Vigan.08G327200.01)Vigna nepalensis
42314445GA77899.770.35SYNONYMOUS_CODING(SILENT|atC/atT|I106|None|Vigan.08G327200.01)Vigna nepalensis
42314454GA791073.770.34SYNONYMOUS_CODING(SILENT|cgC/cgT|R103|None|Vigan.08G327200.01)Vigna nepalensis
42314457AG831288.770.45SYNONYMOUS_CODING(SILENT|gaT/gaC|D102|None|Vigan.08G327200.01)Vigna nepalensis
42314475GA691101.770.41SYNONYMOUS_CODING(SILENT|aaC/aaT|N96|None|Vigan.08G327200.01)Vigna nepalensis
42314481CA701146.770.43NON_SYNONYMOUS_CODING(MISSENSE|tgG/tgT|W94C|None|Vigan.08G327200.01)Vigna nepalensis
42314484GA69252.770.16SYNONYMOUS_CODING(SILENT|cgC/cgT|R93|None|Vigan.08G327200.01)Vigna nepalensis
42314485CT691146.770.43NON_SYNONYMOUS_CODING(MISSENSE|cGc/cAc|R93H|None|Vigan.08G327200.01)Vigna nepalensis
42314487GA70252.770.16SYNONYMOUS_CODING(SILENT|ggC/ggT|G92|None|Vigan.08G327200.01)Vigna nepalensis
42314489CT68252.770.16NON_SYNONYMOUS_CODING(MISSENSE|Ggc/Agc|G92S|None|Vigan.08G327200.01)Vigna nepalensis
42314501AT62270.770.16NON_SYNONYMOUS_CODING(MISSENSE|Tcc/Acc|S88T|None|Vigan.08G327200.01)Vigna nepalensis
42314504GA60276.770.17NON_SYNONYMOUS_CODING(MISSENSE|Ctc/Ttc|L87F|None|Vigan.08G327200.01)Vigna nepalensis
42314511GA62874.770.39SYNONYMOUS_CODING(SILENT|ggC/ggT|G84|None|Vigan.08G327200.01)Vigna nepalensis
42314514GA64312.770.19SYNONYMOUS_CODING(SILENT|ggC/ggT|G83|None|Vigan.08G327200.01)Vigna nepalensis
42314517GA65348.770.18SYNONYMOUS_CODING(SILENT|tcC/tcT|S82|None|Vigan.08G327200.01)Vigna nepalensis
42314518GT53966.770.47NON_SYNONYMOUS_CODING(MISSENSE|tCc/tAc|S82Y|None|Vigan.08G327200.01)Vigna nepalensis
42314523GT65300.770.18NON_SYNONYMOUS_CODING(MISSENSE|aaC/aaA|N80K|None|Vigan.08G327200.01)Vigna nepalensis
42314530TA72288.770.17NON_SYNONYMOUS_CODING(MISSENSE|aAg/aTg|K78M|None|Vigan.08G327200.01)Vigna nepalensis
42314541GA711372.770.51SYNONYMOUS_CODING(SILENT|acC/acT|T74|None|Vigan.08G327200.01)Vigna nepalensis
42314547CT70778.770.31SYNONYMOUS_CODING(SILENT|ctG/ctA|L72|None|Vigan.08G327200.01)Vigna nepalensis
42314552CA64306.770.16NON_SYNONYMOUS_CODING(MISSENSE|Ggc/Tgc|G71C|None|Vigan.08G327200.01)Vigna nepalensis
42314556GA601173.770.45SYNONYMOUS_CODING(SILENT|gaC/gaT|D69|None|Vigan.08G327200.01)Vigna nepalensis
42314558CT60597.770.30NON_SYNONYMOUS_CODING(MISSENSE|Gac/Aac|D69N|None|Vigan.08G327200.01)Vigna nepalensis
42314559GC601002.770.45SYNONYMOUS_CODING(SILENT|acC/acG|T68|None|Vigan.08G327200.01)Vigna nepalensis
42314560GA59597.770.31NON_SYNONYMOUS_CODING(MISSENSE|aCc/aTc|T68I|None|Vigan.08G327200.01)Vigna nepalensis
42314582CT58597.770.31NON_SYNONYMOUS_CODING(MISSENSE|Ggt/Agt|G61S|None|Vigan.08G327200.01)Vigna nepalensis
42314590CT56602.770.30NON_SYNONYMOUS_CODING(MISSENSE|cGt/cAt|R58H|None|Vigan.08G327200.01)Vigna nepalensis
42314604AG56940.770.45SYNONYMOUS_CODING(SILENT|gaT/gaC|D53|None|Vigan.08G327200.01)Vigna nepalensis
42314609CT57159.770.14NON_SYNONYMOUS_CODING(MISSENSE|Ggc/Agc|G52S|None|Vigan.08G327200.01)Vigna nepalensis
42314618TG59687.770.32NON_SYNONYMOUS_CODING(MISSENSE|Aac/Cac|N49H|None|Vigan.08G327200.01)Vigna nepalensis
42314620GA58642.770.33NON_SYNONYMOUS_CODING(MISSENSE|gCc/gTc|A48V|None|Vigan.08G327200.01)Vigna nepalensis
42314633AC62273.770.16NON_SYNONYMOUS_CODING(MISSENSE|Tgg/Ggg|W44G|None|Vigan.08G327200.01)Vigna nepalensis
42314641GA66642.770.32NON_SYNONYMOUS_CODING(MISSENSE|aCc/aTc|T41I|None|Vigan.08G327200.01)Vigna nepalensis
42314653GA73291.770.16NON_SYNONYMOUS_CODING(MISSENSE|tCc/tTc|S37F|None|Vigan.08G327200.01)Vigna nepalensis
42314682GA52621.770.35SYNONYMOUS_CODING(SILENT|tcC/tcT|S27|None|Vigan.08G327200.01)Vigna nepalensis
42314688GA53705.770.38SYNONYMOUS_CODING(SILENT|gtC/gtT|V25|None|Vigan.08G327200.01)Vigna nepalensis
42314692GA52705.770.38NON_SYNONYMOUS_CODING(MISSENSE|aCc/aTc|T24I|None|Vigan.08G327200.01)Vigna nepalensis
42314701GA49531.770.33NON_SYNONYMOUS_CODING(MISSENSE|gCc/gTc|A21V|None|Vigan.08G327200.01)Vigna nepalensis
42314729GT48531.770.29NON_SYNONYMOUS_CODING(MISSENSE|Cag/Aag|Q12K|None|Vigan.08G327200.01)Vigna nepalensis
42314737CT45454.770.27NON_SYNONYMOUS_CODING(MISSENSE|tGc/tAc|C9Y|None|Vigan.08G327200.01)Vigna nepalensis
42314742GA42376.770.29SYNONYMOUS_CODING(SILENT|agC/agT|S7|None|Vigan.08G327200.01)Vigna nepalensis
42314743CT42379.770.29NON_SYNONYMOUS_CODING(MISSENSE|aGc/aAc|S7N|None|Vigan.08G327200.01)Vigna nepalensis
42314751CT37343.770.30SYNONYMOUS_CODING(SILENT|gcG/gcA|A4|None|Vigan.08G327200.01)Vigna nepalensis
42314795CG44103.770.14UTR_5_PRIME(|33||None|Vigan.08G327200.01)Vigna nepalensis
42314859CG361636.771.00UTR_5_PRIME(|97||None|Vigan.08G327200.01)Vigna nepalensis
42314874GA341588.771.00START_GAINED(|||None|Vigan.08G327200.01), UTR_5_PRIME(|112||None|Vigan.08G327200.01)Vigna nepalensis
42314899TC321356.771.00UTR_5_PRIME(|137||None|Vigan.08G327200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
42310933ACA632117.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311443CTTAC632747.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42311513CAGC723184.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312281GAAGATGGACAAGAAAAATTAAAATGAG462123.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312803GGAAATTACCCTAGCCT452527.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42312813TTA542451.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42313420CCTTG552446.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314009TAAAT441775.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314036GGAAA331740.731.00INTRON(|||None|Vigan.08G327200.01)Vigna nepalensis
42314761ATCTA40199.730.20CODON_DELETION(|atg/|M1|None|Vigan.08G327200.01), START_LOST(|atg/|M1|None|Vigan.08G327200.01), UTR_5_PRIME(|0||None|Vigan.08G327200.01)Vigna nepalensis
42314828TTGAGAGA311350.731.00UTR_5_PRIME(|67||None|Vigan.08G327200.01)Vigna nepalensis