Variant information

Chr08:3896956 - 3901366

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3897012GA491945.771.00UTR_3_PRIME(|4174||None|Vigan.08G050300.01), UTR_5_PRIME(|138||None|Vigan.08G050200.01)Vigna nepalensis
3897578AT572359.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|3608||None|Vigan.08G050300.01)Vigna nepalensis
3897662CA552174.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|3524||None|Vigan.08G050300.01)Vigna nepalensis
3897743TC783113.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|3443||None|Vigan.08G050300.01)Vigna nepalensis
3897952GT562123.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|3234||None|Vigan.08G050300.01)Vigna nepalensis
3898114CT502044.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|3072||None|Vigan.08G050300.01)Vigna nepalensis
3898212GC461748.771.00NON_SYNONYMOUS_CODING(MISSENSE|Ggg/Cgg|G92R|None|Vigan.08G050200.01), UTR_3_PRIME(|2974||None|Vigan.08G050300.01)Vigna nepalensis
3898878AC471782.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|2308||None|Vigan.08G050300.01)Vigna nepalensis
3898989CT331474.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|2197||None|Vigan.08G050300.01)Vigna nepalensis
3898995AG351522.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|2191||None|Vigan.08G050300.01)Vigna nepalensis
3899624GC532120.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|1562||None|Vigan.08G050300.01)Vigna nepalensis
3899938GA522371.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|1248||None|Vigan.08G050300.01)Vigna nepalensis
3899971AT552164.771.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|1215||None|Vigan.08G050300.01)Vigna nepalensis
3900539TC612772.771.00INTRON(|||None|Vigan.08G050200.01), UPSTREAM(|4484||None|Vigan.08G050400.01), UTR_3_PRIME(|647||None|Vigan.08G050300.01)Vigna nepalensis
3900548TC602654.771.00INTRON(|||None|Vigan.08G050200.01), UPSTREAM(|4475||None|Vigan.08G050400.01), UTR_3_PRIME(|638||None|Vigan.08G050300.01)Vigna nepalensis
3900887AG421619.771.00UPSTREAM(|4136||None|Vigan.08G050400.01), UTR_3_PRIME(|214||None|Vigan.08G050200.01), UTR_3_PRIME(|299||None|Vigan.08G050300.01)Vigna nepalensis
3901045CA522119.771.00UPSTREAM(|3978||None|Vigan.08G050400.01), UTR_3_PRIME(|141||None|Vigan.08G050300.01), UTR_3_PRIME(|372||None|Vigan.08G050200.01)Vigna nepalensis
3901252AG602372.771.00SYNONYMOUS_CODING(SILENT|ttT/ttC|F320|None|Vigan.08G050300.01), UPSTREAM(|3771||None|Vigan.08G050400.01), UTR_3_PRIME(|579||None|Vigan.08G050200.01)Vigna nepalensis
3901322TA642449.771.00INTRON(|||None|Vigan.08G050300.01), UPSTREAM(|3701||None|Vigan.08G050400.01), UTR_3_PRIME(|649||None|Vigan.08G050200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3896946TTTAACAAGAAGATTAAGAGGTATTAAGAT472051.731.00DOWNSTREAM(|9||None|Vigan.08G050300.01), INTERGENIC(||||), INTRAGENIC(|||None|), UPSTREAM(|9||None|Vigan.08G050200.01), UTR_3_PRIME(|4212||None|Vigan.08G050300.01), UTR_5_PRIME(|176||None|Vigan.08G050200.01)Vigna nepalensis
3897531GGTCGAGTGAGTA502320.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|3654||None|Vigan.08G050300.01)Vigna nepalensis
3897800TGT632486.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|3385||None|Vigan.08G050300.01)Vigna nepalensis
3897905ACA522055.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|3280||None|Vigan.08G050300.01)Vigna nepalensis
3898648AATACCTCGA401724.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|2530||None|Vigan.08G050300.01)Vigna nepalensis
3899087CTC34861.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|2098||None|Vigan.08G050300.01)Vigna nepalensis
3899269TTTTA441949.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|1916||None|Vigan.08G050300.01)Vigna nepalensis
3899274GGT37987.730.97INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|1911||None|Vigan.08G050300.01)Vigna nepalensis
3899512GGAACTGA643074.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|1673||None|Vigan.08G050300.01)Vigna nepalensis
3899687CTTATTAGTCATGTTTCTTTACCATTGTTGTGTGGGCTTTGTATTATC231040.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|1453||None|Vigan.08G050300.01)Vigna nepalensis
3899931CTAC532337.731.00INTRON(|||None|Vigan.08G050200.01), UTR_3_PRIME(|1253||None|Vigan.08G050300.01)Vigna nepalensis
3900101AAG642124.731.00INTRON(|||None|Vigan.08G050200.01), UPSTREAM(|4921||None|Vigan.08G050400.01), UTR_3_PRIME(|1084||None|Vigan.08G050300.01)Vigna nepalensis