VIGGS:Variant information

Chr08:38121865 - 38131548

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
38122049	T	C	61	2495.77	1.00	UTR_3_PRIME(\|77\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122256	T	A	63	2464.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122559	G	A	32	1418.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122587	C	T	37	1476.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122620	A	G	48	1927.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122649	A	G	52	2084.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122755	A	G	17	662.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122779	T	C	17	653.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122802	A	G	16	495.77	0.88	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122820	A	G	24	957.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122910	C	T	30	1103.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122936	G	A	22	727.84	0.91	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38122956	T	C	14	534.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123002	C	T	9	301.78	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123018	T	C	7	256.8	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123044	C	T	5	196.9	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123051	A	G	5	196.9	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123069	T	A	10	350.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123099	A	G	21	819.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123138	C	T	31	1221.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123150	G	A	31	1226.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123201	G	A	18	645.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123219	T	C	13	422.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123236	A	G	9	304.78	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123253	A	G	8	267.78	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123274	A	G	8	274.78	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123384	T	C	9	367.78	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123459	T	C	5	173.9	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123483	T	C	9	376.78	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123492	G	A	9	376.78	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123504	G	A	12	439.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123554	G	A	20	871.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123556	T	A	20	871.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123587	C	T	29	1038.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123654	C	T	39	1444.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123680	G	A	30	1156.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123700	C	T	19	735.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123717	A	C	14	516.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123839	A	G	25	908.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123871	G	A	26	917.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123983	C	A	19	686.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124029	A	G	5	159.9	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124048	A	G	6	199.84	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124063	C	G	10	370.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124111	C	T	24	927.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124125	G	A	28	1045.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124147	T	C	27	1046.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124334	T	C	32	1329.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124347	A	G	31	1279.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124382	A	G	29	1141.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124427	A	G	17	735.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124441	A	G	17	781.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124453	A	G	17	736.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124455	T	C	17	736.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124484	A	G	17	735.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124486	G	A	17	781.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124502	G	T	19	826.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124506	A	G	17	781.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124526	A	G	15	646.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124540	G	A	18	826.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124559	C	G	19	871.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124560	G	A	19	871.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124589	T	C	13	601.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124616	T	C	20	871.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124639	A	G	26	1097.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124798	G	A	24	946.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124813	C	T	21	848.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124878	T	C	19	765.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125057	T	C	71	2648.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125220	G	C	60	2393.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125283	A	G	68	2643.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125349	A	C	59	2433.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125420	C	T	56	2211.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125599	A	G	49	1875.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125678	A	G	45	2026.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125716	T	C	45	2053.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125764	C	T	44	1744.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125907	A	C	49	1965.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38126003	G	C	51	1884.77	0.98	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38126164	C	T	56	2264.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38126190	C	A	57	2366.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38126580	C	T	64	2740.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38126884	A	G	63	2473.77	0.98	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127011	T	C	59	2272.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127066	G	C	52	2297.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127070	T	C	51	2301.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127303	G	A	61	2537.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127337	G	T	65	2614.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127437	G	T	65	2514.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127554	G	C	56	2231.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127720	T	C	41	1631.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127895	T	C	59	2440.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38128022	G	A	42	1504.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38128201	C	T	28	1152.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38128520	C	T	50	2071.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38128670	T	C	60	2446.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Acc/Gcc\|T118A\|None\|Vigan.08G300500.01)	Vigna nepalensis
38128894	C	A	58	2562.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38128895	A	T	57	2562.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38129265	G	T	63	2446.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38129558	C	G	46	1774.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38129750	G	A	55	2132.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130166	C	T	44	1665.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130193	G	A	47	1774.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130227	A	T	52	2012.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130263	G	T	50	1990.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130448	T	C	64	2640.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130905	C	A	54	2229.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38131080	A	C	51	1964.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38131175	A	T	51	2081.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38131206	A	C	44	1781.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38131268	G	A	53	2056.77	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38131417	T	C	57	2203.77	1.00	SYNONYMOUS_CODING(SILENT\|caA/caG\|Q5\|None\|Vigan.08G300500.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
38122552	C	CTTGTGAGTAATAGAGAAGA	31	1691.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38123390	TAGTGGAACTAGAGTGCTGACGATCCTCATACCATCTGAGAAATTCGTG	T	8	322.75	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124582	C	CCGACGA	14	682.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124587	G	GGCGACAGCGACA	13	592.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124601	C	CGATAGT	13	682.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38124852	G	GCGGCCCGATAA	16	800.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125516	A	ACATTTCCCCACATTTTCATGCAATATCCTGTAGTTTACTTTGTATCTTTCATAGAAACTGCCCAATCTGCATCAGCAAAATATTCAATCATCCAGTGTTCTTTTGGAACAGTAGACC	35	3063.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125695	TG	T	45	1984.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38125853	GTGCTCTAGGAGATTATTTTAGTCCATA	G	52	2283.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38126529	CAT	C	61	2627.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38126601	TATGTTCCTCCATGGGTTTAAGGTTCTACATCTTTCGAACATCTGGTCAAGATAAACTTTCTCCTCTGTCATTCA	T	50	2426.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38127080	A	ACCT	47	2150.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130583	T	TG	73	2867.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130626	T	TCATCATAAATCACCAATCTGAAC	50	2721.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis
38130673	C	CAG	52	2282.73	1.00	INTRON(\|\|\|None\|Vigan.08G300500.01)	Vigna nepalensis