VIGGS:Variant information

Chr08:24325525 - 24333114

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
24325548	T	C	49	2304.77	1.00	UTR_5_PRIME(\|12\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24325552	G	A	50	2268.77	1.00	UTR_5_PRIME(\|8\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24325718	C	A	27	1019.77	1.00	SYNONYMOUS_CODING(SILENT\|gcC/gcA\|A53\|None\|Vigan.08G248000.01)	Vigna nepalensis
24325791	A	C	50	2034.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24325825	C	T	59	2323.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24325922	A	C	44	1982.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Agt/Cgt\|S77R\|None\|Vigan.08G248000.01)	Vigna nepalensis
24325943	G	A	48	2117.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Gca/Aca\|A84T\|None\|Vigan.08G248000.01)	Vigna nepalensis
24325999	C	T	57	2602.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326017	C	T	60	2783.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326019	A	T	60	2783.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326024	T	C	59	2741.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326515	A	G	50	1942.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326554	C	T	54	2401.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326556	G	A	54	2556.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326580	A	T	55	2450.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326650	G	A	52	2295.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326651	T	G	51	2295.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326660	C	A	47	2179.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326670	T	A	49	2269.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326695	G	A	51	2255.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326736	A	C	52	2083.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326796	A	G	52	2332.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326798	T	A	51	2377.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326817	C	A	48	2266.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326837	A	G	52	2318.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326938	C	T	46	2086.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327042	A	G	49	2101.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327066	C	A	42	1842.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327252	G	A	47	2086.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327284	G	A	50	2183.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327307	C	T	50	2308.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327324	G	A	52	2329.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327375	A	G	45	1985.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327384	C	T	40	1796.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327387	A	C	38	1726.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327407	G	T	40	1906.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327439	A	T	40	1951.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327461	G	A	40	1771.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327464	C	T	37	1681.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327473	A	G	38	1726.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327589	T	C	23	1048.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327669	T	G	41	1574.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327742	A	T	51	2090.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327828	C	A	49	2000.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327915	T	A	50	2096.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327992	T	A	66	2486.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328036	G	C	59	2783.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328092	A	T	47	1820.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328215	C	T	50	1881.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328240	C	A	41	1590.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328343	C	G	53	2311.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328406	A	T	52	2296.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328428	C	G	54	2507.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328490	T	A	57	2504.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328500	C	A	55	2421.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328538	G	T	51	2191.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328562	T	C	49	2176.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328564	C	A	48	2176.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328572	C	T	47	2190.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328573	A	G	49	2190.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328616	A	C	43	1991.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328632	T	A	42	1951.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328668	C	T	41	1774.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328687	A	C	43	1951.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328690	A	T	42	1951.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328703	G	T	43	1951.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328717	A	G	42	1947.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328721	G	A	43	1902.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329303	G	T	56	2247.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329360	A	G	50	2297.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329367	T	A	52	2396.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329484	A	T	66	2649.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329497	G	A	63	2603.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329626	C	A	39	1520.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329672	G	C	51	1980.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329684	C	T	49	2001.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329807	G	T	57	2221.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330041	T	G	52	2037.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330052	C	A	56	2491.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330053	A	G	56	2491.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330100	C	T	49	2176.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330101	G	T	49	2218.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330106	G	A	49	2163.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330230	A	C	42	1710.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330262	C	T	46	1809.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330393	T	G	8	331.78	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Tcc/Gcc\|S215A\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330396	T	A	8	331.78	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Ttt/Att\|F216I\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330398	T	G	8	331.78	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|ttT/ttG\|F216L\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330411	C	G	10	466.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Cag/Gag\|Q221E\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330413	G	A	11	511.77	1.00	SYNONYMOUS_CODING(SILENT\|caG/caA\|Q221\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330418	G	C	13	601.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|aGt/aCt\|S223T\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330419	T	C	13	601.77	1.00	SYNONYMOUS_CODING(SILENT\|agT/agC\|S223\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330421	C	G	13	646.77	1.00	STOP_GAINED(NONSENSE\|tCa/tGa\|S224*\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330422	A	C	14	691.77	1.00	SYNONYMOUS_CODING(SILENT\|tcA/tcC\|S224\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330430	A	T	17	736.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|cAt/cTt\|H227L\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330431	T	A	17	736.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|caT/caA\|H227Q\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330550	A	G	55	2006.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|aAa/aGa\|K267R\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330602	A	G	56	2211.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330639	C	T	64	2584.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330763	C	G	68	2711.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|ttC/ttG\|F306L\|None\|Vigan.08G248000.01)	Vigna nepalensis
24330960	T	C	62	2483.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24331056	C	T	43	1706.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Cgt/Tgt\|R337C\|None\|Vigan.08G248000.01)	Vigna nepalensis
24331122	A	G	44	1672.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Atc/Gtc\|I359V\|None\|Vigan.08G248000.01)	Vigna nepalensis
24331209	C	G	61	2338.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24331394	C	T	50	1961.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24331486	G	C	55	2191.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24331864	G	C	83	3707.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24331868	T	G	80	3669.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332035	C	T	63	2396.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|gCa/gTa\|A425V\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332285	A	T	52	2164.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332390	G	A	45	1846.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332408	T	C	40	1589.77	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332769	G	A	32	1236.77	1.00	UTR_3_PRIME(\|71\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332808	G	T	12	512.77	1.00	UTR_3_PRIME(\|110\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332832	G	C	11	511.77	1.00	UTR_3_PRIME(\|134\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332836	G	A	11	466.77	1.00	UTR_3_PRIME(\|138\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332853	A	T	10	511.77	1.00	UTR_3_PRIME(\|155\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332864	A	T	9	601.77	1.00	UTR_3_PRIME(\|166\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332872	C	G	14	601.77	1.00	UTR_3_PRIME(\|174\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332878	A	T	17	781.77	1.00	UTR_3_PRIME(\|180\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332879	T	A	18	781.77	1.00	UTR_3_PRIME(\|181\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24333066	G	T	41	1670.77	1.00	UTR_3_PRIME(\|368\|\|None\|Vigan.08G248000.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
24325869	C	CTTG	52	2391.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326064	AATATAT	A	58	2526.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326824	C	CA	51	2342.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326901	ACCTATTTACGGGC	A	40	1810.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24326943	GAACCGTATTTTCAAATACGGTTAATAT	G	45	1970.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327160	ATT	A	53	2106.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327213	G	GTATTAT	39	1716.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327237	TA	T	42	1856.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327256	GA	G	48	2142.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327408	A	AT	41	1897.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327430	A	AT	40	1852.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327434	A	AAT	42	1897.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327598	CATATT	C	27	1221.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24327609	GATATATTA	G	29	1263.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328023	TA	T	58	2534.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328048	AT	A	58	2662.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328064	AT	A	45	2032.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328128	CA	C	53	1940.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328334	AT	A	49	2184.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328433	T	TA	55	2435.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328605	A	AC	42	1922.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24328636	A	AAAAATT	42	1961.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329377	CAT	C	51	2257.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329654	C	CTATATATATATA, CTATATATATATATA	6	1810.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24329905	A	AC	66	2345.73	1.00	INTRON(\|\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332810	TGAAGAAGG	T	12	502.73	1.00	UTR_3_PRIME(\|113\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332821	AGAGAGGCC	A	12	502.73	1.00	UTR_3_PRIME(\|124\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332830	TG	T	12	502.73	1.00	UTR_3_PRIME(\|133\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332838	AAAGCCGC	A	11	457.73	1.00	UTR_3_PRIME(\|141\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332848	AGG	A	10	412.74	1.00	UTR_3_PRIME(\|151\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332855	G	GTTT	10	547.73	1.00	UTR_3_PRIME(\|158\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332858	T	TGTTTCTC	9	457.73	1.00	UTR_3_PRIME(\|161\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332860	AC	A	8	457.73	1.00	UTR_3_PRIME(\|163\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332865	C	CTATTTTCT	10	637.73	1.00	UTR_3_PRIME(\|168\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332869	AG	A	13	592.73	1.00	UTR_3_PRIME(\|172\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332874	T	TCG	14	637.73	1.00	UTR_3_PRIME(\|177\|\|None\|Vigan.08G248000.01)	Vigna nepalensis
24332884	TAC	T	21	883.73	1.00	UTR_3_PRIME(\|187\|\|None\|Vigan.08G248000.01)	Vigna nepalensis