Variant information

Chr08:13185049 - 13187691

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
13185054TC401816.771.00DOWNSTREAM(|3567||None|Vigan.08G148200.01), DOWNSTREAM(|4686||None|Vigan.08G148400.01), UTR_5_PRIME(|49||None|Vigan.08G148300.01)Vigna nepalensis
13185056CA411881.771.00DOWNSTREAM(|3569||None|Vigan.08G148200.01), DOWNSTREAM(|4684||None|Vigan.08G148400.01), UTR_5_PRIME(|47||None|Vigan.08G148300.01)Vigna nepalensis
13185065GA391741.771.00DOWNSTREAM(|3578||None|Vigan.08G148200.01), DOWNSTREAM(|4675||None|Vigan.08G148400.01), UTR_5_PRIME(|38||None|Vigan.08G148300.01)Vigna nepalensis
13185376AT512333.771.00DOWNSTREAM(|3889||None|Vigan.08G148200.01), DOWNSTREAM(|4364||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185378AT512333.771.00DOWNSTREAM(|3891||None|Vigan.08G148200.01), DOWNSTREAM(|4362||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185413GA471907.771.00DOWNSTREAM(|3926||None|Vigan.08G148200.01), DOWNSTREAM(|4327||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185463AC562469.771.00DOWNSTREAM(|3976||None|Vigan.08G148200.01), DOWNSTREAM(|4277||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185469CT542401.771.00DOWNSTREAM(|3982||None|Vigan.08G148200.01), DOWNSTREAM(|4271||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185479AC482221.771.00DOWNSTREAM(|3992||None|Vigan.08G148200.01), DOWNSTREAM(|4261||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185483GC472086.771.00DOWNSTREAM(|3996||None|Vigan.08G148200.01), DOWNSTREAM(|4257||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185511CA331456.771.00DOWNSTREAM(|4024||None|Vigan.08G148200.01), DOWNSTREAM(|4229||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185820TA552137.771.00DOWNSTREAM(|3920||None|Vigan.08G148400.01), DOWNSTREAM(|4333||None|Vigan.08G148200.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185890GA592278.771.00DOWNSTREAM(|3850||None|Vigan.08G148400.01), DOWNSTREAM(|4403||None|Vigan.08G148200.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185937AC632802.771.00DOWNSTREAM(|3803||None|Vigan.08G148400.01), DOWNSTREAM(|4450||None|Vigan.08G148200.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185962AT632884.771.00DOWNSTREAM(|3778||None|Vigan.08G148400.01), DOWNSTREAM(|4475||None|Vigan.08G148200.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185964TC642884.771.00DOWNSTREAM(|3776||None|Vigan.08G148400.01), DOWNSTREAM(|4477||None|Vigan.08G148200.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186104AC592256.771.00DOWNSTREAM(|3636||None|Vigan.08G148400.01), DOWNSTREAM(|4617||None|Vigan.08G148200.01), SYNONYMOUS_CODING(SILENT|Aga/Cga|R112|None|Vigan.08G148300.01)Vigna nepalensis
13186511CT321372.771.00DOWNSTREAM(|3229||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186519CT321453.771.00DOWNSTREAM(|3221||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186526TA311438.771.00DOWNSTREAM(|3214||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186554CT401771.771.00DOWNSTREAM(|3186||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186575TC391771.771.00DOWNSTREAM(|3165||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186612CA291276.771.00DOWNSTREAM(|3128||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186614GA291276.771.00DOWNSTREAM(|3126||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186746CT271203.771.00DOWNSTREAM(|2994||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186748GT281290.771.00DOWNSTREAM(|2992||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186760AT321463.771.00DOWNSTREAM(|2980||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186782GA381615.771.00DOWNSTREAM(|2958||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186787TA381615.771.00DOWNSTREAM(|2953||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186789GA381615.771.00DOWNSTREAM(|2951||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186790TA381615.771.00DOWNSTREAM(|2950||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186791TA381615.771.00DOWNSTREAM(|2949||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186800TA381615.771.00DOWNSTREAM(|2940||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186806TG381615.771.00DOWNSTREAM(|2934||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186931AT562301.771.00DOWNSTREAM(|2809||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186959GA552174.771.00DOWNSTREAM(|2781||None|Vigan.08G148400.01), SPLICE_SITE_REGION(|||None|Vigan.08G148300.01), SYNONYMOUS_CODING(SILENT|ggG/ggA|G203|None|Vigan.08G148300.01)Vigna nepalensis
13187076CG542148.771.00DOWNSTREAM(|2664||None|Vigan.08G148400.01), NON_SYNONYMOUS_CODING(MISSENSE|gaC/gaG|D242E|None|Vigan.08G148300.01)Vigna nepalensis
13187149GA511987.771.00DOWNSTREAM(|2591||None|Vigan.08G148400.01), NON_SYNONYMOUS_CODING(MISSENSE|Gac/Aac|D267N|None|Vigan.08G148300.01)Vigna nepalensis
13187313CA592310.771.00DOWNSTREAM(|2427||None|Vigan.08G148400.01), SYNONYMOUS_CODING(SILENT|cgC/cgA|R321|None|Vigan.08G148300.01)Vigna nepalensis
13187601TG652961.771.00DOWNSTREAM(|2139||None|Vigan.08G148400.01), UTR_3_PRIME(|264||None|Vigan.08G148300.01)Vigna nepalensis
13187606TA683075.771.00DOWNSTREAM(|2134||None|Vigan.08G148400.01), UTR_3_PRIME(|269||None|Vigan.08G148300.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
13185088CTC431493.731.00DOWNSTREAM(|3602||None|Vigan.08G148200.01), DOWNSTREAM(|4651||None|Vigan.08G148400.01), UTR_5_PRIME(|14||None|Vigan.08G148300.01)Vigna nepalensis
13185362TTCC391483.730.97DOWNSTREAM(|3876||None|Vigan.08G148200.01), DOWNSTREAM(|4377||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185500TTA381762.731.00DOWNSTREAM(|4014||None|Vigan.08G148200.01), DOWNSTREAM(|4239||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185513GTTTTGTAG311447.731.00DOWNSTREAM(|4027||None|Vigan.08G148200.01), DOWNSTREAM(|4226||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13185522AAACAG301312.731.00DOWNSTREAM(|4036||None|Vigan.08G148200.01), DOWNSTREAM(|4217||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186560TGAT401762.731.00DOWNSTREAM(|3179||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186593AAAATAAAATA351672.731.00DOWNSTREAM(|3146||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186743TTACA251150.731.00DOWNSTREAM(|2996||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186750ATAAGAGA301365.731.00DOWNSTREAM(|2989||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186762GGTT341454.731.00DOWNSTREAM(|2977||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186765TGGTGAAT341454.731.00DOWNSTREAM(|2974||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186775TTCC351575.731.00DOWNSTREAM(|2964||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186777TTGT371606.731.00DOWNSTREAM(|2962||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186793GTGAG381606.731.00DOWNSTREAM(|2946||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186801CTTC381606.731.00DOWNSTREAM(|2938||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186809ATGATA381605.731.00DOWNSTREAM(|2930||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186815CAACACACGTGTGTC381604.731.00DOWNSTREAM(|2924||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13186833AAAGAGT381603.731.00DOWNSTREAM(|2906||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis
13187514TAGTAT421846.731.00DOWNSTREAM(|2225||None|Vigan.08G148400.01), UTR_3_PRIME(|178||None|Vigan.08G148300.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
13186835(TA)10(TA)3321603.731.00DOWNSTREAM(|2904||None|Vigan.08G148400.01), INTRON(|||None|Vigan.08G148300.01)Vigna nepalensis