VIGGS:Variant information

Chr07:29792240 - 29803657

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Species
- Vigna nepalensis
Effect
- INTRON

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
29793019	T	A	45	1786.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29793093	T	A	60	2508.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29793161	G	A	65	2514.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29793797	A	G	59	2333.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29793972	C	T	57	2556.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29793997	A	G	55	2387.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794045	C	G	53	2174.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794159	G	A	54	2251.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794254	T	A	53	1675.77	0.85	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794308	A	T	56	2343.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794341	A	G	51	2165.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794444	C	T	62	2279.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794543	T	A	53	2038.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794590	C	G	36	1591.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794596	A	G	31	1476.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794644	T	G	26	1065.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794694	C	T	38	1625.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794777	T	C	41	1662.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794855	T	C	38	1644.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794864	A	C	37	1762.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794893	C	T	43	1996.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794932	T	C	40	1771.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794936	A	G	39	1861.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794969	A	G	43	2041.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794972	A	G	43	2041.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794973	T	C	43	1996.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29794991	C	T	40	1898.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795021	A	G	39	1700.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795099	C	T	52	213.77	0.17	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795106	G	A	57	243.77	0.18	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795143	G	A	63	1801.77	0.71	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795177	C	T	58	1928.77	0.83	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795224	A	G	52	2057.77	0.98	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795413	G	A	59	2169.77	0.90	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795431	C	T	59	2416.77	0.95	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795440	A	G	53	2337.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795545	T	C	49	2163.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795568	C	T	48	2171.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795575	A	G	42	1906.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795584	T	G	41	1906.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795591	G	T	42	1861.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795595	T	C	40	1906.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795596	C	T	41	1816.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795612	A	G	44	1948.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795702	T	C	34	1447.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795727	G	A	36	1670.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795743	T	C	38	1625.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795832	C	T	25	993.77	0.96	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795842	C	T	24	936.78	0.96	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795885	T	C	17	711.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795888	G	A	16	711.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795911	C	T	21	950.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795917	A	G	23	983.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795983	A	T	31	1366.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795984	A	C	31	1366.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795989	C	T	31	1395.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796016	A	G	18	637.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796038	A	G	29	1338.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796048	G	A	33	1423.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796073	G	A	30	1131.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796287	T	A	43	1641.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796339	A	G	40	1764.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796344	A	G	41	1801.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796439	C	T	41	1658.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796483	A	G	40	1737.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796503	A	G	37	1758.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796514	A	G	37	1661.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796578	T	C	52	2062.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796623	A	G	60	2686.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796630	A	G	64	2921.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796639	G	A	63	2892.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796640	T	C	63	2892.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796661	C	T	55	2378.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796722	T	C	62	2304.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796826	A	G	58	2284.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29797026	G	A	52	2035.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29797424	G	A	68	2370.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29797679	A	T	60	2370.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29797967	A	G	83	3318.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29798161	C	T	63	2502.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29798300	T	A	75	3253.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29798320	G	A	68	3021.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799400	T	C	41	1664.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799446	T	A	50	2150.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799501	G	A	53	2067.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799633	C	T	47	2037.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799876	C	T	43	1762.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799930	T	C	49	2248.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799932	T	C	51	2248.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29800237	A	G	43	1646.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29800553	A	G	54	2149.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29800729	C	T	53	2330.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29800730	C	T	52	2330.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29801043	C	T	58	2205.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29801084	C	T	52	2071.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29801207	C	T	79	3466.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29801231	G	A	70	3118.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29801314	C	T	76	2929.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29802029	A	G	42	1674.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29802729	G	C	63	2551.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29802922	A	G	57	2504.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29802929	C	T	55	2416.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29803011	A	C	42	1642.77	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
29794661	TG	T	32	1441.73	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29795166	ATAGAATAACTCTCGGTGAGCTGTTACAACAAGGCAT	A	69	288.73	0.14	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29796034	TG	T	28	1291.73	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29797649	AT	A	46	1543.73	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799439	AT	A	42	1992.73	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29799667	CTGAGAGAGGTGTTGTCGAGAGAGGTGTTGT	C	49	2199.73	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29801433	TA	T	63	2303.73	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29801905	AT	A	47	1370.73	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis
29802479	G	GTA	53	2159.73	1.00	INTRON(\|\|\|None\|Vigan.07G217600.01)	Vigna nepalensis