VIGGS:Variant information

Chr07:29730787 - 29733069

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
29730859	A	T	44	1840.77	1.00	UTR_5_PRIME(\|257\|\|None\|Vigan.07G217000.01)	Vigna nepalensis
29730935	G	A	39	1534.77	1.00	UTR_5_PRIME(\|181\|\|None\|Vigan.07G217000.01)	Vigna nepalensis
29730958	A	T	46	1853.77	1.00	START_GAINED(\|\|\|None\|Vigan.07G217000.01), UTR_5_PRIME(\|158\|\|None\|Vigan.07G217000.01)	Vigna nepalensis
29731253	G	A	58	2330.77	1.00	SYNONYMOUS_CODING(SILENT\|gaG/gaA\|E46\|None\|Vigan.07G217000.01)	Vigna nepalensis
29731289	T	C	48	1999.77	1.00	SYNONYMOUS_CODING(SILENT\|gtT/gtC\|V58\|None\|Vigan.07G217000.01)	Vigna nepalensis
29731309	G	A	56	2304.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|cGa/cAa\|R65Q\|None\|Vigan.07G217000.01)	Vigna nepalensis
29731468	A	G	59	2199.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|gAt/gGt\|D118G\|None\|Vigan.07G217000.01)	Vigna nepalensis
29731553	C	A	41	1621.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01)	Vigna nepalensis
29731724	C	T	31	1212.77	1.00	SYNONYMOUS_CODING(SILENT\|Ctg/Ttg\|L167\|None\|Vigan.07G217000.01)	Vigna nepalensis
29731986	A	G	68	2528.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4855\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732034	G	T	71	2784.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4807\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732188	A	T	61	2743.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4653\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732220	T	C	68	3211.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4621\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732229	A	T	69	3256.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4612\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732265	C	T	73	3346.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4576\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732292	A	G	70	3235.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4549\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732293	T	C	73	3235.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4548\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732332	A	G	24	1051.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4509\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732342	G	A	30	1366.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4499\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732370	G	T	49	2266.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4471\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732384	C	T	59	2671.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4457\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732413	C	G	61	2851.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4428\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732468	C	G	55	2510.77	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4373\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732931	G	A	43	1895.77	1.00	UPSTREAM(\|3910\|\|None\|Vigan.07G217100.01), UTR_3_PRIME(\|57\|\|None\|Vigan.07G217000.01)	Vigna nepalensis
29732932	A	T	43	1895.77	1.00	UPSTREAM(\|3909\|\|None\|Vigan.07G217100.01), UTR_3_PRIME(\|58\|\|None\|Vigan.07G217000.01)	Vigna nepalensis
29733063	G	A	28	1136.77	1.00	UPSTREAM(\|3778\|\|None\|Vigan.07G217100.01), UTR_3_PRIME(\|189\|\|None\|Vigan.07G217000.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
29732202	GA	G	66	2932.73	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4638\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732232	C	CTTTATTTTAAGG	69	3607.73	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4608\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732424	ATGTT	A	60	2752.73	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4416\|\|None\|Vigan.07G217100.01)	Vigna nepalensis
29732439	G	GTC	61	2887.73	1.00	INTRON(\|\|\|None\|Vigan.07G217000.01), UPSTREAM(\|4401\|\|None\|Vigan.07G217100.01)	Vigna nepalensis