Variant information

Chr07:29316111 - 29319713

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
29316620CT59414.770.22DOWNSTREAM(|4372||None|Vigan.07G212000.01), SYNONYMOUS_CODING(SILENT|atC/atT|I50|None|Vigan.07G211900.01)Vigna nepalensis
29316624GA61414.770.23DOWNSTREAM(|4368||None|Vigan.07G212000.01), NON_SYNONYMOUS_CODING(MISSENSE|Gcc/Acc|A52T|None|Vigan.07G211900.01)Vigna nepalensis
29316641CG58420.770.22DOWNSTREAM(|4351||None|Vigan.07G212000.01), SYNONYMOUS_CODING(SILENT|ccC/ccG|P57|None|Vigan.07G211900.01)Vigna nepalensis
29316803GT391541.771.00DOWNSTREAM(|4189||None|Vigan.07G212000.01), SYNONYMOUS_CODING(SILENT|ggG/ggT|G111|None|Vigan.07G211900.01)Vigna nepalensis
29316832GC371313.730.86DOWNSTREAM(|4160||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29317658CT552341.771.00DOWNSTREAM(|3334||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29317790GA552401.771.00DOWNSTREAM(|3202||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29317839CG461789.771.00DOWNSTREAM(|3153||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29317904GC512190.771.00DOWNSTREAM(|3088||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29317948AG492174.771.00DOWNSTREAM(|3044||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318007TC562338.771.00DOWNSTREAM(|2985||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318077AT401576.771.00DOWNSTREAM(|2915||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318232CT703115.771.00DOWNSTREAM(|2760||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318236GA683073.771.00DOWNSTREAM(|2756||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318478CA562211.771.00DOWNSTREAM(|2514||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318572CG481903.771.00DOWNSTREAM(|2420||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318914AT652561.771.00DOWNSTREAM(|2078||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318979GT662630.771.00DOWNSTREAM(|2013||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29319479AG592293.771.00DOWNSTREAM(|1513||None|Vigan.07G212000.01), UTR_3_PRIME(|142||None|Vigan.07G211900.01)Vigna nepalensis
29319495GC572482.771.00DOWNSTREAM(|1497||None|Vigan.07G212000.01), UTR_3_PRIME(|158||None|Vigan.07G211900.01)Vigna nepalensis
29319658TC592377.771.00DOWNSTREAM(|1334||None|Vigan.07G212000.01), UTR_3_PRIME(|321||None|Vigan.07G211900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
29316830CCA,
T
41486.731.00DOWNSTREAM(|4161||None|Vigan.07G212000.01), DOWNSTREAM(|4162||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29316905ACA23888.731.00DOWNSTREAM(|4086||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29316932TTTATC17772.731.00DOWNSTREAM(|4059||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29316934AATT18772.731.00DOWNSTREAM(|4057||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29316937TTTTAAGTTGAAAAGGTCTA18772.731.00DOWNSTREAM(|4054||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29317558CAATTGTTTGGTCTTC391688.731.00DOWNSTREAM(|3433||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29317760TTTATTTAT512322.731.00DOWNSTREAM(|3231||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29317930ACTA502407.731.00DOWNSTREAM(|3061||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318088GTATAG,
GTA
8637.730.75DOWNSTREAM(|2901||None|Vigan.07G212000.01), DOWNSTREAM(|2903||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318244TATTATATAACTTTTACTTATCGTCAT673051.731.00DOWNSTREAM(|2747||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29318601TGT431567.731.00DOWNSTREAM(|2390||None|Vigan.07G212000.01), INTRON(|||None|Vigan.07G211900.01)Vigna nepalensis
29319500GGTACTC572570.731.00DOWNSTREAM(|1491||None|Vigan.07G212000.01), UTR_3_PRIME(|164||None|Vigan.07G211900.01)Vigna nepalensis