VIGGS:Variant information

Chr07:28651707 - 28663888

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Species
- Vigna nepalensis
Effect
- INTRON
- UTR_3_PRIME
- UTR_5_PRIME

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
28651870	A	T	70	2793.77	1.00	UTR_3_PRIME(\|264\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28651901	T	C	72	2934.77	0.99	UTR_3_PRIME(\|233\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28651937	G	A	75	3058.77	1.00	UTR_3_PRIME(\|197\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28652361	C	A	62	2484.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28652496	A	G	38	1718.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653186	T	C	48	1818.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653568	T	C	93	214.77	0.14	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653569	A	T	94	214.77	0.14	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653604	G	T	99	536.77	0.20	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653626	C	T	87	375.77	0.17	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653628	A	G	86	381.77	0.16	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653638	A	T	82	300.77	0.13	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653662	C	A	72	384.77	0.19	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653676	G	A	69	435.77	0.22	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653687	T	C	60	453.77	0.23	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653689	A	T	61	414.77	0.23	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653693	A	C	60	448.77	0.23	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653737	G	A	61	262.77	0.18	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653740	T	C	61	256.77	0.16	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653743	C	G	60	234.77	0.15	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653747	G	A	61	186.77	0.13	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653748	T	C	61	189.77	0.13	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28654438	T	C	70	2746.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28654723	A	G	53	1999.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655027	T	C	60	2700.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655028	C	A	60	2700.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655082	C	T	50	1779.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655183	A	C	54	2069.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655334	C	T	58	2606.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655335	A	G	58	2606.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655508	T	C	47	1852.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655574	A	C	53	2042.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655623	G	A	50	1976.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655736	A	T	54	2109.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655895	C	T	59	2330.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28655927	T	C	51	2076.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656419	G	A	36	1410.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656561	A	G	38	79.77	0.13	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656565	G	A	37	82.77	0.14	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656580	G	C	38	76.77	0.13	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656615	T	C	28	1181.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656638	A	G	32	1456.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656747	G	A	59	2402.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657060	T	C	50	2013.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657137	T	G	46	1867.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657249	G	A	46	1748.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657360	C	T	39	1458.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657401	A	G	39	1322.77	0.90	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657638	G	A	32	1378.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657644	C	T	29	1308.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657709	C	T	42	1687.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657895	G	T	30	1159.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657941	G	A	35	1382.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657955	A	G	38	1471.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28657979	A	G	41	1633.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28658012	G	A	39	1512.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28658159	C	A	45	1721.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28658264	C	T	45	1946.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28658289	G	A	52	2143.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28658789	A	G	42	1601.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28658873	T	C	35	1346.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28659138	G	T	45	1685.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28659269	G	A	47	1886.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28659379	C	G	44	1817.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28659457	C	T	48	1682.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28659996	G	C	53	1696.77	0.89	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660006	G	A	58	243.77	0.17	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660023	A	C	58	291.77	0.19	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660024	G	A	58	291.77	0.19	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660058	A	G	60	459.77	0.25	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660061	G	A	60	459.77	0.25	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660112	G	T	54	245.77	0.19	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660119	C	A	50	216.77	0.18	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660133	A	G	51	210.77	0.16	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660143	A	G	50	168.77	0.14	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660145	G	A	50	120.77	0.14	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660154	T	G	45	190.77	0.18	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660156	C	A	44	196.77	0.16	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660159	G	T	42	154.77	0.17	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660162	T	C	40	160.77	0.17	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660163	G	A	40	157.77	0.17	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660166	C	T	41	160.77	0.17	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660174	A	G	38	121.77	0.11	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660176	T	C	39	121.77	0.13	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660182	G	A	40	160.77	0.15	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660197	G	A	45	367.77	0.24	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660201	G	A	44	373.77	0.27	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660209	T	G	47	450.77	0.30	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660218	G	A	53	551.77	0.32	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660270	G	A	43	1693.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660911	T	C	44	1709.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660957	T	C	51	1964.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28660969	G	A	48	1962.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28661358	T	G	58	2239.77	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28663681	G	A	58	2250.77	1.00	UTR_5_PRIME(\|18\|\|None\|Vigan.07G207500.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
28652021	TTCAACAAATAGC	T	65	2861.73	1.00	UTR_3_PRIME(\|101\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28652291	GA	G	57	1380.73	0.95	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28652315	A	AT	69	2950.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28652503	T	TAAATATATA	45	2119.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28652665	TCA	T	52	2300.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28652681	CAA	C	50	2257.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28652747	A	AC	45	1799.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28653546	T	TTGACTGGCCTAGTCTAATTATTGACACCA	83	275.73	0.10	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656661	AAGAGTGATTATC	A	44	1961.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28656676	AACTG	A	45	1961.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28661100	T	TCGAG	35	1858.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis
28661101	T	TACGATTC	35	1858.73	1.00	INTRON(\|\|\|None\|Vigan.07G207500.01)	Vigna nepalensis