VIGGS:Variant information

Chr07:25940018 - 25946814

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
25941619	A	C	59	2370.77	1.00	INTRON(\|\|\|None\|Vigan.07G187600.01), UPSTREAM(\|3559\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25941858	A	G	40	1540.77	1.00	INTRON(\|\|\|None\|Vigan.07G187600.01), UPSTREAM(\|3798\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25942013	A	G	55	2275.77	1.00	INTRON(\|\|\|None\|Vigan.07G187600.01), UPSTREAM(\|3953\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25942097	A	G	53	2112.77	1.00	INTRON(\|\|\|None\|Vigan.07G187600.01), UPSTREAM(\|4037\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25942152	T	A	39	1713.77	1.00	INTRON(\|\|\|None\|Vigan.07G187600.01), UPSTREAM(\|4092\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25942159	G	A	38	1711.77	1.00	INTRON(\|\|\|None\|Vigan.07G187600.01), UPSTREAM(\|4099\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25942219	T	C	57	2262.77	1.00	INTRON(\|\|\|None\|Vigan.07G187600.01), UPSTREAM(\|4159\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25942918	T	G	47	1760.77	1.00	DOWNSTREAM(\|4510\|\|None\|Vigan.07G187700.01), NON_SYNONYMOUS_CODING(MISSENSE\|atT/atG\|I84M\|None\|Vigan.07G187600.01), UPSTREAM(\|4858\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25943051	C	T	54	2218.77	1.00	DOWNSTREAM(\|4377\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01), UPSTREAM(\|4991\|\|None\|Vigan.07G187500.01)	Vigna nepalensis
25943289	G	T	47	1979.77	1.00	DOWNSTREAM(\|4139\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25943336	A	G	64	2502.77	1.00	DOWNSTREAM(\|4092\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25943930	A	T	50	2221.77	1.00	DOWNSTREAM(\|3498\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25943932	G	T	50	2221.77	1.00	DOWNSTREAM(\|3496\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25944535	T	G	69	2753.77	1.00	DOWNSTREAM(\|2893\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25944629	A	C	47	1924.77	1.00	DOWNSTREAM(\|2799\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25945504	T	G	48	1990.77	1.00	DOWNSTREAM(\|1924\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25945957	G	C	48	1961.77	1.00	DOWNSTREAM(\|1471\|\|None\|Vigan.07G187700.01), SYNONYMOUS_CODING(SILENT\|ctG/ctC\|L177\|None\|Vigan.07G187600.01)	Vigna nepalensis
25946109	G	A	57	2167.77	1.00	DOWNSTREAM(\|1319\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25946402	G	C	76	3001.77	1.00	DOWNSTREAM(\|1026\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
25943108	A	AAG	54	2392.73	1.00	DOWNSTREAM(\|4319\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25944408	CGTACTT	C	73	3238.73	1.00	DOWNSTREAM(\|3019\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25945281	A	AT	39	1340.73	1.00	DOWNSTREAM(\|2146\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis
25945615	CAT	C	47	1981.73	1.00	DOWNSTREAM(\|1812\|\|None\|Vigan.07G187700.01), INTRON(\|\|\|None\|Vigan.07G187600.01)	Vigna nepalensis