VIGGS:Variant information

Chr07:2490163 - 2494095

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
2490406	G	C	52	2062.77	1.00	DOWNSTREAM(\|4445\|\|None\|Vigan.07G035300.01), SYNONYMOUS_CODING(SILENT\|ctG/ctC\|L53\|None\|Vigan.07G035200.01)	Vigna nepalensis
2490730	C	T	58	2232.77	1.00	DOWNSTREAM(\|4121\|\|None\|Vigan.07G035300.01), SYNONYMOUS_CODING(SILENT\|gaC/gaT\|D109\|None\|Vigan.07G035200.01)	Vigna nepalensis
2491804	C	A	50	2019.77	1.00	DOWNSTREAM(\|3047\|\|None\|Vigan.07G035300.01), INTRON(\|\|\|None\|Vigan.07G035200.01)	Vigna nepalensis
2491953	G	A	45	1837.77	1.00	DOWNSTREAM(\|2898\|\|None\|Vigan.07G035300.01), INTRON(\|\|\|None\|Vigan.07G035200.01)	Vigna nepalensis
2492051	A	G	61	2716.77	1.00	DOWNSTREAM(\|2800\|\|None\|Vigan.07G035300.01), NON_SYNONYMOUS_CODING(MISSENSE\|Aat/Gat\|N398D\|None\|Vigan.07G035200.01)	Vigna nepalensis
2492052	A	G	61	2716.77	1.00	DOWNSTREAM(\|2799\|\|None\|Vigan.07G035300.01), NON_SYNONYMOUS_CODING(MISSENSE\|aAt/aGt\|N398S\|None\|Vigan.07G035200.01)	Vigna nepalensis
2494092	G	A	10	466.77	1.00	DOWNSTREAM(\|759\|\|None\|Vigan.07G035300.01), UTR_3_PRIME(\|369\|\|None\|Vigan.07G035200.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
2491365	A	AT	54	1969.73	1.00	DOWNSTREAM(\|3485\|\|None\|Vigan.07G035300.01), INTRON(\|\|\|None\|Vigan.07G035200.01)	Vigna nepalensis
2494094	CA	C	11	502.73	1.00	DOWNSTREAM(\|756\|\|None\|Vigan.07G035300.01), UTR_3_PRIME(\|372\|\|None\|Vigan.07G035200.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
2490989	(TA)35	(TA)6	39	1735.73	1.00	DOWNSTREAM(\|3861\|\|None\|Vigan.07G035300.01), INTRON(\|\|\|None\|Vigan.07G035200.01)	Vigna nepalensis