Variant information

Chr07:1483078 - 1488876

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
1484043GA482200.771.00DOWNSTREAM(|1923||None|Vigan.07G021600.01), DOWNSTREAM(|3542||None|Vigan.07G021500.01), INTRON(|||None|Vigan.07G021700.01), UPSTREAM(|3530||None|Vigan.07G021400.01)Vigna nepalensis
1484176AC512033.771.00DOWNSTREAM(|2056||None|Vigan.07G021600.01), DOWNSTREAM(|3675||None|Vigan.07G021500.01), SYNONYMOUS_CODING(SILENT|ggT/ggG|G573|None|Vigan.07G021700.01), UPSTREAM(|3663||None|Vigan.07G021400.01)Vigna nepalensis
1484458AG642613.771.00DOWNSTREAM(|2338||None|Vigan.07G021600.01), DOWNSTREAM(|3957||None|Vigan.07G021500.01), SPLICE_SITE_REGION(|||None|Vigan.07G021700.01), SYNONYMOUS_CODING(SILENT|acT/acC|T512|None|Vigan.07G021700.01), UPSTREAM(|3945||None|Vigan.07G021400.01)Vigna nepalensis
1484569AT672430.771.00DOWNSTREAM(|2449||None|Vigan.07G021600.01), DOWNSTREAM(|4068||None|Vigan.07G021500.01), SYNONYMOUS_CODING(SILENT|atT/atA|I475|None|Vigan.07G021700.01), UPSTREAM(|4056||None|Vigan.07G021400.01)Vigna nepalensis
1484674TA652434.771.00DOWNSTREAM(|2554||None|Vigan.07G021600.01), DOWNSTREAM(|4173||None|Vigan.07G021500.01), INTRON(|||None|Vigan.07G021700.01), UPSTREAM(|4161||None|Vigan.07G021400.01)Vigna nepalensis
1484857CT492018.771.00DOWNSTREAM(|2737||None|Vigan.07G021600.01), DOWNSTREAM(|4356||None|Vigan.07G021500.01), INTRON(|||None|Vigan.07G021700.01), UPSTREAM(|4344||None|Vigan.07G021400.01)Vigna nepalensis
1485004CG552245.771.00DOWNSTREAM(|2884||None|Vigan.07G021600.01), DOWNSTREAM(|4503||None|Vigan.07G021500.01), INTRON(|||None|Vigan.07G021700.01), UPSTREAM(|4491||None|Vigan.07G021400.01)Vigna nepalensis
1485084CT552098.771.00DOWNSTREAM(|2964||None|Vigan.07G021600.01), DOWNSTREAM(|4583||None|Vigan.07G021500.01), SYNONYMOUS_CODING(SILENT|gcG/gcA|A431|None|Vigan.07G021700.01), UPSTREAM(|4571||None|Vigan.07G021400.01)Vigna nepalensis
1485195CT572214.771.00DOWNSTREAM(|3075||None|Vigan.07G021600.01), DOWNSTREAM(|4694||None|Vigan.07G021500.01), SYNONYMOUS_CODING(SILENT|ccG/ccA|P394|None|Vigan.07G021700.01), UPSTREAM(|4682||None|Vigan.07G021400.01)Vigna nepalensis
1485442GA491984.771.00DOWNSTREAM(|3322||None|Vigan.07G021600.01), DOWNSTREAM(|4941||None|Vigan.07G021500.01), INTRON(|||None|Vigan.07G021700.01), UPSTREAM(|4929||None|Vigan.07G021400.01)Vigna nepalensis
1485477CT501919.771.00DOWNSTREAM(|3357||None|Vigan.07G021600.01), DOWNSTREAM(|4976||None|Vigan.07G021500.01), INTRON(|||None|Vigan.07G021700.01), UPSTREAM(|4964||None|Vigan.07G021400.01)Vigna nepalensis
1485742TC592389.771.00DOWNSTREAM(|3622||None|Vigan.07G021600.01), INTRON(|||None|Vigan.07G021700.01)Vigna nepalensis
1486200TC411502.771.00DOWNSTREAM(|4080||None|Vigan.07G021600.01), SYNONYMOUS_CODING(SILENT|gtA/gtG|V382|None|Vigan.07G021700.01)Vigna nepalensis
1486335AG512259.771.00DOWNSTREAM(|4215||None|Vigan.07G021600.01), INTRON(|||None|Vigan.07G021700.01)Vigna nepalensis
1486344GT552382.771.00DOWNSTREAM(|4224||None|Vigan.07G021600.01), INTRON(|||None|Vigan.07G021700.01)Vigna nepalensis
1486635TC491972.771.00DOWNSTREAM(|4515||None|Vigan.07G021600.01), NON_SYNONYMOUS_CODING(MISSENSE|Atg/Gtg|M288V|None|Vigan.07G021700.01)Vigna nepalensis
1487496CG672743.771.00INTRON(|||None|Vigan.07G021700.01)Vigna nepalensis
1487956TC622574.771.00INTRON(|||None|Vigan.07G021700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
1483124CAC581583.731.00DOWNSTREAM(|1005||None|Vigan.07G021600.01), DOWNSTREAM(|2624||None|Vigan.07G021500.01), UPSTREAM(|2612||None|Vigan.07G021400.01), UTR_3_PRIME(|284||None|Vigan.07G021700.01)Vigna nepalensis
1484037AGA512293.731.00DOWNSTREAM(|1918||None|Vigan.07G021600.01), DOWNSTREAM(|3537||None|Vigan.07G021500.01), INTRON(|||None|Vigan.07G021700.01), UPSTREAM(|3525||None|Vigan.07G021400.01)Vigna nepalensis
1485394TTC461811.731.00DOWNSTREAM(|3275||None|Vigan.07G021600.01), DOWNSTREAM(|4894||None|Vigan.07G021500.01), INTRON(|||None|Vigan.07G021700.01), UPSTREAM(|4882||None|Vigan.07G021400.01)Vigna nepalensis
1486421CATC612672.731.00DOWNSTREAM(|4302||None|Vigan.07G021600.01), INTRON(|||None|Vigan.07G021700.01)Vigna nepalensis
1487452TAT642162.731.00INTRON(|||None|Vigan.07G021700.01)Vigna nepalensis
1488254GTATG522285.731.00INTRON(|||None|Vigan.07G021700.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
1488786(AGA)10(AGA)7361496.731.00UTR_5_PRIME(|27||None|Vigan.07G021700.01)Vigna nepalensis