VIGGS:Variant information

Chr06:6461389 - 6469222

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
6461655	T	C	50	1997.77	1.00	UTR_5_PRIME(\|24\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6461783	T	A	46	1861.77	1.00	SYNONYMOUS_CODING(SILENT\|atT/atA\|I35\|None\|Vigan.06G049700.01)	Vigna nepalensis
6461828	A	T	55	2014.77	1.00	SYNONYMOUS_CODING(SILENT\|ggA/ggT\|G50\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462126	T	G	64	2561.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462194	C	A	68	2836.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462248	A	G	62	2506.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462261	A	T	59	2422.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462294	T	A	62	2485.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462506	T	C	60	2636.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462729	T	C	54	2134.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462811	C	A	58	2598.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462892	C	A	48	2076.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462904	G	A	53	2436.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462911	C	T	53	2447.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6463116	A	G	49	2014.77	1.00	SYNONYMOUS_CODING(SILENT\|ctA/ctG\|L99\|None\|Vigan.06G049700.01)	Vigna nepalensis
6463152	C	T	43	1616.77	1.00	SYNONYMOUS_CODING(SILENT\|gaC/gaT\|D111\|None\|Vigan.06G049700.01)	Vigna nepalensis
6463224	T	C	46	1808.77	1.00	SYNONYMOUS_CODING(SILENT\|aaT/aaC\|N135\|None\|Vigan.06G049700.01)	Vigna nepalensis
6463374	A	G	48	1899.77	1.00	SYNONYMOUS_CODING(SILENT\|gcA/gcG\|A185\|None\|Vigan.06G049700.01)	Vigna nepalensis
6463672	C	T	49	1917.77	1.00	SYNONYMOUS_CODING(SILENT\|acC/acT\|T248\|None\|Vigan.06G049700.01)	Vigna nepalensis
6463745	A	G	44	1747.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Agc/Ggc\|S273G\|None\|Vigan.06G049700.01)	Vigna nepalensis
6463793	A	T	50	2074.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6463979	A	G	57	2306.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464061	C	G	69	2844.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464156	C	T	63	2467.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464411	G	T	46	2065.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464666	A	G	75	2904.77	0.99	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464798	A	C	69	3129.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464970	T	C	74	2903.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465027	G	A	74	3074.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465045	C	G	73	3041.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465094	A	G	62	2549.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465204	C	A	59	2600.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465299	G	C	62	2416.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465336	G	A	44	1867.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465437	A	C	52	2089.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465494	A	G	59	2586.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465515	A	G	61	2660.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465744	G	A	47	1717.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465763	C	G	38	1715.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465766	G	A	38	1690.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465808	T	C	41	1640.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465861	T	C	68	2609.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466072	C	T	61	2744.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466079	C	G	59	2663.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466154	T	C	69	2706.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466254	A	G	58	2391.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466329	T	A	64	2530.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466353	T	C	69	2773.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466365	G	A	68	2611.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466420	T	G	58	2308.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466510	G	T	56	2291.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466777	T	A	44	1715.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466856	T	A	56	2179.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6467103	A	G	61	2468.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6467243	T	C	59	2349.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6467664	G	A	32	1245.77	1.00	SYNONYMOUS_CODING(SILENT\|ctG/ctA\|L291\|None\|Vigan.06G049700.01)	Vigna nepalensis
6467937	C	T	53	2118.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6468058	C	T	50	2132.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6468150	C	T	54	2401.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6468151	G	A	54	2401.77	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6468237	G	A	48	2016.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|aGg/aAg\|R322K\|None\|Vigan.06G049700.01)	Vigna nepalensis
6468700	T	A	52	1256.77	0.96	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
6462327	CA	C	68	2344.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462420	AT	A	44	1477.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462496	CT	C	54	2502.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6462788	T	TC	55	2512.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464125	A	ATTGTTCATCATACAT	57	2796.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464399	TCTG	T	44	1924.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464805	C	CA	69	3277.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6464821	TAA	T	72	3283.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6465210	G	GT	61	2698.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466127	G	GC	59	2078.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6466230	ACATG	A	58	2562.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6467455	AATTTTTAGGCTTAGTTGTCTTGGTGGTTTTCTATTATTCC	A	8	79.73	0.62	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6467614	TG	T	21	749.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6467903	AAT	A	59	2401.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis
6468693	AT	A	53	2364.73	1.00	INTRON(\|\|\|None\|Vigan.06G049700.01)	Vigna nepalensis