VIGGS:Variant information

Chr06:37826012 - 37829127

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
37826107	T	A	41	1539.77	1.00	DOWNSTREAM(\|1150\|\|None\|Vigan.06G256300.01), UPSTREAM(\|3442\|\|None\|Vigan.06G256200.01), UPSTREAM(\|4775\|\|None\|Vigan.06G256500.01), UTR_5_PRIME(\|113\|\|None\|Vigan.06G256400.01)	Vigna nepalensis
37826535	A	C	53	2047.77	1.00	DOWNSTREAM(\|1578\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|3870\|\|None\|Vigan.06G256200.01), UPSTREAM(\|4347\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37826708	C	T	40	1489.77	1.00	DOWNSTREAM(\|1751\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|4043\|\|None\|Vigan.06G256200.01), UPSTREAM(\|4174\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37826845	A	G	55	2132.77	1.00	DOWNSTREAM(\|1888\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|4037\|\|None\|Vigan.06G256500.01), UPSTREAM(\|4180\|\|None\|Vigan.06G256200.01)	Vigna nepalensis
37827085	A	G	51	2039.77	1.00	DOWNSTREAM(\|2128\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|3797\|\|None\|Vigan.06G256500.01), UPSTREAM(\|4420\|\|None\|Vigan.06G256200.01)	Vigna nepalensis
37827353	G	A	42	1556.77	0.98	DOWNSTREAM(\|2396\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|3529\|\|None\|Vigan.06G256500.01), UPSTREAM(\|4688\|\|None\|Vigan.06G256200.01)	Vigna nepalensis
37827933	T	A	68	2630.77	1.00	DOWNSTREAM(\|2976\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|2949\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37828128	T	A	51	2023.77	1.00	DOWNSTREAM(\|3171\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|2754\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37828227	C	G	45	1787.77	1.00	DOWNSTREAM(\|3270\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|2655\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37828240	A	G	49	1925.77	1.00	DOWNSTREAM(\|3283\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|2642\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37828294	T	C	61	2476.77	1.00	DOWNSTREAM(\|3337\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|2588\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37828362	T	G	61	2247.77	1.00	DOWNSTREAM(\|3405\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|2520\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37828422	A	G	62	2464.77	1.00	DOWNSTREAM(\|3465\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|2460\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37828788	A	G	59	2316.77	1.00	DOWNSTREAM(\|3831\|\|None\|Vigan.06G256300.01), UPSTREAM(\|2094\|\|None\|Vigan.06G256500.01), UTR_3_PRIME(\|30\|\|None\|Vigan.06G256400.01)	Vigna nepalensis
37828938	A	G	48	2044.77	1.00	DOWNSTREAM(\|3981\|\|None\|Vigan.06G256300.01), UPSTREAM(\|1944\|\|None\|Vigan.06G256500.01), UPSTREAM(\|4858\|\|None\|Vigan.06G256600.01), UTR_3_PRIME(\|180\|\|None\|Vigan.06G256400.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
37826797	A	AT	41	1158.73	1.00	DOWNSTREAM(\|1841\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|4084\|\|None\|Vigan.06G256500.01), UPSTREAM(\|4133\|\|None\|Vigan.06G256200.01)	Vigna nepalensis
37827839	GTATA	G	39	1688.73	1.00	DOWNSTREAM(\|2883\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), SPLICE_SITE_DONOR(\|\|\|None\|Vigan.06G256400.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|3042\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37827904	G	GGTCTA	48	2398.73	1.00	DOWNSTREAM(\|2948\|\|None\|Vigan.06G256300.01), INTRON(\|\|\|None\|Vigan.06G256400.01), UPSTREAM(\|2977\|\|None\|Vigan.06G256500.01)	Vigna nepalensis
37828817	A	ATTCT	45	1999.73	1.00	DOWNSTREAM(\|3861\|\|None\|Vigan.06G256300.01), UPSTREAM(\|2064\|\|None\|Vigan.06G256500.01), UPSTREAM(\|4978\|\|None\|Vigan.06G256600.01), UTR_3_PRIME(\|60\|\|None\|Vigan.06G256400.01)	Vigna nepalensis
37828956	CT	C	48	2011.73	1.00	DOWNSTREAM(\|4000\|\|None\|Vigan.06G256300.01), UPSTREAM(\|1925\|\|None\|Vigan.06G256500.01), UPSTREAM(\|4839\|\|None\|Vigan.06G256600.01), UTR_3_PRIME(\|199\|\|None\|Vigan.06G256400.01)	Vigna nepalensis
37829017	AT	A	38	1092.73	1.00	DOWNSTREAM(\|4061\|\|None\|Vigan.06G256300.01), UPSTREAM(\|1864\|\|None\|Vigan.06G256500.01), UPSTREAM(\|4778\|\|None\|Vigan.06G256600.01), UTR_3_PRIME(\|260\|\|None\|Vigan.06G256400.01)	Vigna nepalensis