Variant information

Chr06:35939350 - 35943547

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
35939518CT58407.770.24START_GAINED(|||None|Vigan.06G230000.01), UTR_5_PRIME(|387||None|Vigan.06G230000.01)Vigna nepalensis
35939641GA941802.770.62UTR_5_PRIME(|264||None|Vigan.06G230000.01)Vigna nepalensis
35939714GC901556.770.52UTR_5_PRIME(|191||None|Vigan.06G230000.01)Vigna nepalensis
35939736TG1004194.771.00UTR_5_PRIME(|169||None|Vigan.06G230000.01)Vigna nepalensis
35940048CT54536.770.33SYNONYMOUS_CODING(SILENT|ttC/ttT|F48|None|Vigan.06G230000.01)Vigna nepalensis
35940222CG401514.771.00SYNONYMOUS_CODING(SILENT|tcC/tcG|S106|None|Vigan.06G230000.01)Vigna nepalensis
35940355AG562069.770.98NON_SYNONYMOUS_CODING(MISSENSE|Acc/Gcc|T151A|None|Vigan.06G230000.01)Vigna nepalensis
35940503CT431699.771.00NON_SYNONYMOUS_CODING(MISSENSE|cCc/cTc|P200L|None|Vigan.06G230000.01)Vigna nepalensis
35940809CT61601.770.38NON_SYNONYMOUS_CODING(MISSENSE|gCg/gTg|A302V|None|Vigan.06G230000.01)Vigna nepalensis
35940821GA62460.770.31NON_SYNONYMOUS_CODING(MISSENSE|gGg/gAg|G306E|None|Vigan.06G230000.01)Vigna nepalensis
35940837GA57413.770.30SYNONYMOUS_CODING(SILENT|gaG/gaA|E311|None|Vigan.06G230000.01)Vigna nepalensis
35940885CT65494.770.31SYNONYMOUS_CODING(SILENT|caC/caT|H327|None|Vigan.06G230000.01)Vigna nepalensis
35940909CT60488.770.27SYNONYMOUS_CODING(SILENT|agC/agT|S335|None|Vigan.06G230000.01)Vigna nepalensis
35940918GA55426.770.25SYNONYMOUS_CODING(SILENT|tcG/tcA|S338|None|Vigan.06G230000.01)Vigna nepalensis
35940954AG541218.770.67SYNONYMOUS_CODING(SILENT|ccA/ccG|P350|None|Vigan.06G230000.01)Vigna nepalensis
35940967CT48329.770.33NON_SYNONYMOUS_CODING(MISSENSE|Ccg/Tcg|P355S|None|Vigan.06G230000.01), UPSTREAM(|4995||None|Vigan.06G230100.01)Vigna nepalensis
35940992GC582450.771.00NON_SYNONYMOUS_CODING(MISSENSE|gGt/gCt|G363A|None|Vigan.06G230000.01), UPSTREAM(|4970||None|Vigan.06G230100.01)Vigna nepalensis
35941015TC56433.770.29NON_SYNONYMOUS_CODING(MISSENSE|Tcg/Ccg|S371P|None|Vigan.06G230000.01), UPSTREAM(|4947||None|Vigan.06G230100.01)Vigna nepalensis
35941183GT391482.771.00INTRON(|||None|Vigan.06G230000.01), UPSTREAM(|4779||None|Vigan.06G230100.01)Vigna nepalensis
35941443TA321109.771.00INTRON(|||None|Vigan.06G230000.01), UPSTREAM(|4519||None|Vigan.06G230100.01)Vigna nepalensis
35941607CT91746.770.37INTRON(|||None|Vigan.06G230000.01), UPSTREAM(|4355||None|Vigan.06G230100.01)Vigna nepalensis
35941893GA45213.770.24INTRON(|||None|Vigan.06G230000.01), UPSTREAM(|4069||None|Vigan.06G230100.01)Vigna nepalensis
35942178AT341311.771.00INTRON(|||None|Vigan.06G230000.01), UPSTREAM(|3784||None|Vigan.06G230100.01)Vigna nepalensis
35943025AT441655.771.00DOWNSTREAM(|4555||None|Vigan.06G230200.01), NON_SYNONYMOUS_CODING(MISSENSE|Act/Tct|T529S|None|Vigan.06G230000.01), UPSTREAM(|2937||None|Vigan.06G230100.01), UPSTREAM(|4823||None|Vigan.06G230300.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
35939573CTC73516.730.37UTR_5_PRIME(|331||None|Vigan.06G230000.01)Vigna nepalensis
35939582TTC781689.730.62UTR_5_PRIME(|322||None|Vigan.06G230000.01)Vigna nepalensis
35939605GGGA881874.730.65UTR_5_PRIME(|299||None|Vigan.06G230000.01)Vigna nepalensis
35939644CCCTT951248.730.37UTR_5_PRIME(|260||None|Vigan.06G230000.01)Vigna nepalensis
35939954GGTTC863807.731.00CODON_INSERTION(|tgt/tgTTCt|C17CS|None|Vigan.06G230000.01)Vigna nepalensis
35942012AACTT11491.731.00INTRON(|||None|Vigan.06G230000.01), UPSTREAM(|3949||None|Vigan.06G230100.01)Vigna nepalensis
35943459AAT411178.731.00DOWNSTREAM(|4120||None|Vigan.06G230200.01), UPSTREAM(|2502||None|Vigan.06G230100.01), UPSTREAM(|4388||None|Vigan.06G230300.01), UTR_3_PRIME(|337||None|Vigan.06G230000.01)Vigna nepalensis