Variant information

Chr06:35862405 - 35865487

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
35862832GT532151.771.00DOWNSTREAM(|2500||None|Vigan.06G228700.01), DOWNSTREAM(|3856||None|Vigan.06G228900.01), SYNONYMOUS_CODING(SILENT|gtG/gtT|V33|None|Vigan.06G228800.01)Vigna nepalensis
35863062AC652719.771.00DOWNSTREAM(|2730||None|Vigan.06G228700.01), DOWNSTREAM(|3626||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863174GA612757.771.00DOWNSTREAM(|2842||None|Vigan.06G228700.01), DOWNSTREAM(|3514||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863176AG612757.771.00DOWNSTREAM(|2844||None|Vigan.06G228700.01), DOWNSTREAM(|3512||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863241CT451996.771.00DOWNSTREAM(|2909||None|Vigan.06G228700.01), DOWNSTREAM(|3447||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863242CT451996.771.00DOWNSTREAM(|2910||None|Vigan.06G228700.01), DOWNSTREAM(|3446||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863247AC462103.771.00DOWNSTREAM(|2915||None|Vigan.06G228700.01), DOWNSTREAM(|3441||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863259CT511976.771.00DOWNSTREAM(|2927||None|Vigan.06G228700.01), DOWNSTREAM(|3429||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863290TA492129.771.00DOWNSTREAM(|2958||None|Vigan.06G228700.01), DOWNSTREAM(|3398||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863890AG632510.771.00DOWNSTREAM(|2798||None|Vigan.06G228900.01), DOWNSTREAM(|3558||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864017TC501960.771.00DOWNSTREAM(|2671||None|Vigan.06G228900.01), DOWNSTREAM(|3685||None|Vigan.06G228700.01), NON_SYNONYMOUS_CODING(MISSENSE|gTt/gCt|V155A|None|Vigan.06G228800.01)Vigna nepalensis
35864117GT522370.771.00DOWNSTREAM(|2571||None|Vigan.06G228900.01), DOWNSTREAM(|3785||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01), SPLICE_SITE_REGION(|||None|Vigan.06G228800.01)Vigna nepalensis
35864123CT462101.771.00DOWNSTREAM(|2565||None|Vigan.06G228900.01), DOWNSTREAM(|3791||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864141AC481822.771.00DOWNSTREAM(|2547||None|Vigan.06G228900.01), DOWNSTREAM(|3809||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864180CT482161.771.00DOWNSTREAM(|2508||None|Vigan.06G228900.01), DOWNSTREAM(|3848||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864181CT492161.771.00DOWNSTREAM(|2507||None|Vigan.06G228900.01), DOWNSTREAM(|3849||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864194CT512226.771.00DOWNSTREAM(|2494||None|Vigan.06G228900.01), DOWNSTREAM(|3862||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864246TC491853.771.00DOWNSTREAM(|2442||None|Vigan.06G228900.01), DOWNSTREAM(|3914||None|Vigan.06G228700.01), SYNONYMOUS_CODING(SILENT|agT/agC|S191|None|Vigan.06G228800.01)Vigna nepalensis
35864270GT522310.771.00DOWNSTREAM(|2418||None|Vigan.06G228900.01), DOWNSTREAM(|3938||None|Vigan.06G228700.01), SYNONYMOUS_CODING(SILENT|ctG/ctT|L199|None|Vigan.06G228800.01)Vigna nepalensis
35864276CT512301.771.00DOWNSTREAM(|2412||None|Vigan.06G228900.01), DOWNSTREAM(|3944||None|Vigan.06G228700.01), SYNONYMOUS_CODING(SILENT|gtC/gtT|V201|None|Vigan.06G228800.01)Vigna nepalensis
35864300CT542018.771.00DOWNSTREAM(|2388||None|Vigan.06G228900.01), DOWNSTREAM(|3968||None|Vigan.06G228700.01), SYNONYMOUS_CODING(SILENT|gcC/gcT|A209|None|Vigan.06G228800.01)Vigna nepalensis
35864337GA502182.771.00DOWNSTREAM(|2351||None|Vigan.06G228900.01), DOWNSTREAM(|4005||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864343AT472069.771.00DOWNSTREAM(|2345||None|Vigan.06G228900.01), DOWNSTREAM(|4011||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864347GA452069.771.00DOWNSTREAM(|2341||None|Vigan.06G228900.01), DOWNSTREAM(|4015||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864360TC472131.771.00DOWNSTREAM(|2328||None|Vigan.06G228900.01), DOWNSTREAM(|4028||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864362GA482131.771.00DOWNSTREAM(|2326||None|Vigan.06G228900.01), DOWNSTREAM(|4030||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864365TG462207.771.00DOWNSTREAM(|2323||None|Vigan.06G228900.01), DOWNSTREAM(|4033||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864369TC462072.771.00DOWNSTREAM(|2319||None|Vigan.06G228900.01), DOWNSTREAM(|4037||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864456GA491909.771.00DOWNSTREAM(|2232||None|Vigan.06G228900.01), DOWNSTREAM(|4124||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864497GA531999.771.00DOWNSTREAM(|2191||None|Vigan.06G228900.01), DOWNSTREAM(|4165||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864534GC612743.771.00DOWNSTREAM(|2154||None|Vigan.06G228900.01), DOWNSTREAM(|4202||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864541TC622966.771.00DOWNSTREAM(|2147||None|Vigan.06G228900.01), DOWNSTREAM(|4209||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864569CG632582.771.00DOWNSTREAM(|2119||None|Vigan.06G228900.01), DOWNSTREAM(|4237||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864582CT612472.771.00DOWNSTREAM(|2106||None|Vigan.06G228900.01), DOWNSTREAM(|4250||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864803AG532111.771.00DOWNSTREAM(|1885||None|Vigan.06G228900.01), DOWNSTREAM(|4471||None|Vigan.06G228700.01), SYNONYMOUS_CODING(SILENT|gaA/gaG|E276|None|Vigan.06G228800.01)Vigna nepalensis
35864890TC481914.771.00DOWNSTREAM(|1798||None|Vigan.06G228900.01), DOWNSTREAM(|4558||None|Vigan.06G228700.01), SYNONYMOUS_CODING(SILENT|atT/atC|I305|None|Vigan.06G228800.01)Vigna nepalensis
35864945AG441819.771.00DOWNSTREAM(|1743||None|Vigan.06G228900.01), DOWNSTREAM(|4613||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
35863289TTA482120.731.00DOWNSTREAM(|2958||None|Vigan.06G228700.01), DOWNSTREAM(|3398||None|Vigan.06G228900.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35863773AATAATATGTC602805.731.00DOWNSTREAM(|2914||None|Vigan.06G228900.01), DOWNSTREAM(|3442||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864115GGT532336.731.00DOWNSTREAM(|2572||None|Vigan.06G228900.01), DOWNSTREAM(|3784||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01), SPLICE_SITE_REGION(|||None|Vigan.06G228800.01)Vigna nepalensis
35864195AAT512217.731.00DOWNSTREAM(|2492||None|Vigan.06G228900.01), DOWNSTREAM(|3864||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864419AAATA371581.731.00DOWNSTREAM(|2268||None|Vigan.06G228900.01), DOWNSTREAM(|4088||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864426AAAGTTGTGA391581.731.00DOWNSTREAM(|2261||None|Vigan.06G228900.01), DOWNSTREAM(|4095||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis
35864550CGC632824.731.00DOWNSTREAM(|2137||None|Vigan.06G228900.01), DOWNSTREAM(|4219||None|Vigan.06G228700.01), INTRON(|||None|Vigan.06G228800.01)Vigna nepalensis