VIGGS:Variant information

Chr06:33524198 - 33529174

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
33524798	G	C	41	1763.77	1.00	DOWNSTREAM(\|1498\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|3637\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33524930	A	C	61	2441.77	1.00	DOWNSTREAM(\|1630\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|3769\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33525125	C	G	42	1603.77	1.00	DOWNSTREAM(\|1825\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|3964\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33525689	C	A	63	2533.77	1.00	DOWNSTREAM(\|2389\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|4528\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33525721	C	T	59	2428.77	1.00	DOWNSTREAM(\|2421\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|4560\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33525858	C	A	55	2196.77	1.00	DOWNSTREAM(\|2558\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|4697\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33525932	G	C	44	2019.77	1.00	DOWNSTREAM(\|2632\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|4771\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33525937	A	T	49	2166.77	1.00	DOWNSTREAM(\|2637\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|4776\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33526123	G	A	65	2546.77	1.00	DOWNSTREAM(\|2823\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|4962\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33526587	G	A	49	2004.77	1.00	DOWNSTREAM(\|3287\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33526708	T	C	50	2050.77	1.00	DOWNSTREAM(\|3408\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33526725	T	A	54	2135.77	1.00	DOWNSTREAM(\|3425\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33526778	A	T	50	1736.77	1.00	DOWNSTREAM(\|3478\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33526811	C	A	54	2083.77	1.00	DOWNSTREAM(\|3511\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33526953	A	G	34	1200.77	1.00	DOWNSTREAM(\|3653\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33527010	A	C	37	1412.77	1.00	DOWNSTREAM(\|3710\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33527086	T	G	10	397.77	1.00	DOWNSTREAM(\|3786\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33527117	A	G	6	197.84	1.00	DOWNSTREAM(\|3817\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33527141	C	A	5	185.9	1.00	DOWNSTREAM(\|3841\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33527570	C	T	46	1457.77	1.00	DOWNSTREAM(\|4270\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33527742	C	G	44	1765.77	1.00	DOWNSTREAM(\|4442\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33527863	C	G	47	1871.77	1.00	DOWNSTREAM(\|4563\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33527902	A	G	52	2161.77	1.00	DOWNSTREAM(\|4602\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33528156	G	A	48	1914.77	1.00	DOWNSTREAM(\|4856\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33528333	A	T	52	2075.77	1.00	INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33528530	G	A	57	2582.77	1.00	INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33528536	T	C	57	2572.77	1.00	INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33528588	G	C	57	2205.77	1.00	INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33528656	A	G	51	2125.77	1.00	INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33529171	T	C	42	1557.77	1.00	UTR_5_PRIME(\|150\|\|None\|Vigan.06G198800.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
33524778	CAA	C	25	1471.73	1.00	DOWNSTREAM(\|1479\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|3618\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33525088	G	GTATTCAGCAAC	46	2300.73	1.00	DOWNSTREAM(\|1789\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|3928\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33525545	A	AGAG	57	2524.73	1.00	DOWNSTREAM(\|2246\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01), UPSTREAM(\|4385\|\|None\|Vigan.06G198600.01)	Vigna nepalensis
33527721	C	CT	34	1105.73	1.00	DOWNSTREAM(\|4422\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33528170	T	TA	49	1389.73	0.98	DOWNSTREAM(\|4871\|\|None\|Vigan.06G198700.01), INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33528967	G	GAA	52	2156.73	1.00	INTRON(\|\|\|None\|Vigan.06G198800.01)	Vigna nepalensis
33529034	A	AAG	57	2512.73	1.00	UTR_5_PRIME(\|14\|\|None\|Vigan.06G198800.01)	Vigna nepalensis