VIGGS:Variant information

Chr06:142992 - 161670

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
143046	C	A	64	2813.77	1.00	UTR_5_PRIME(\|105\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
143176	A	G	42	1660.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|tAt/tGt\|Y9C\|None\|Vigan.06G001400.01)	Vigna nepalensis
143198	A	T	37	1367.77	1.00	SYNONYMOUS_CODING(SILENT\|ggA/ggT\|G16\|None\|Vigan.06G001400.01)	Vigna nepalensis
143538	C	T	59	2294.77	1.00	SYNONYMOUS_CODING(SILENT\|ccC/ccT\|P105\|None\|Vigan.06G001400.01)	Vigna nepalensis
143727	T	C	51	2063.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Tcc/Ccc\|S128P\|None\|Vigan.06G001400.01)	Vigna nepalensis
143888	A	C	57	2202.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
144154	G	T	63	2492.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
144294	A	C	78	3002.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
144329	T	A	61	2368.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
144441	C	A	61	2362.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
144491	C	G	52	2025.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
144635	T	G	52	2192.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
144745	T	C	61	2528.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
145183	T	A	26	1086.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|aTg/aAg\|M197K\|None\|Vigan.06G001400.01)	Vigna nepalensis
145234	C	T	26	1090.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
149499	G	C	9	376.78	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
149798	G	C	39	1554.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
149826	T	G	23	921.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
149842	G	A	12	453.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150096	G	A	76	3085.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150173	A	T	79	3141.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150192	G	A	80	3060.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150586	T	C	51	174.77	0.16	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150588	C	G	51	2076.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150594	C	T	51	165.77	0.14	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150736	A	G	51	2031.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150798	A	G	54	2109.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150850	A	G	50	2078.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
150934	G	C	50	2073.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
151010	T	C	62	2492.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
151068	T	C	61	2723.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
151084	T	C	58	2571.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
151535	T	G	68	2663.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
151830	A	G	61	2384.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
151973	A	G	69	2889.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
152038	T	C	66	2634.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
153505	T	A	59	2442.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
153554	A	G	54	2300.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
153584	T	A	61	2488.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
153729	A	G	67	2747.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
153917	C	T	71	2724.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
154344	A	C	71	2774.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
154442	C	T	66	2650.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
154545	G	C	58	2296.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
154840	G	A	69	2799.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
154942	T	A	78	3182.76	0.99	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
155499	T	C	58	2350.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
155646	C	T	21	883.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
155661	T	C	14	644.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
155663	G	T	13	601.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
155664	T	A	13	601.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
160531	A	G	10	366.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
160757	T	C	56	2257.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
160797	T	C	60	2513.77	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
161569	T	G	61	2764.77	1.00	UTR_3_PRIME(\|199\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
161571	C	T	61	2764.77	1.00	UTR_3_PRIME(\|201\|\|None\|Vigan.06G001400.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
142991	CAAACTCCAAGTTCAAAATTCG	C	48	2124.73	1.00	UTR_5_PRIME(\|139\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
144347	CTT	C	49	1834.73	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
145236	T	TTTC	26	1081.73	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
149498	C	CACA	8	367.74	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
149714	AG	A	50	1868.73	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
151149	A	ATATATTTATTTACTCTAATTAACTTATAT	16	1065.73	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
152926	TC	T	52	1331.73	0.96	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
154230	T	TTCTACTTTCTTCTG	47	2576.73	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
155597	A	AAGAAATGAAT	30	1550.73	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis
160826	TAG	T	52	1948.73	1.00	INTRON(\|\|\|None\|Vigan.06G001400.01)	Vigna nepalensis