Variant information

Chr05:5542506 - 5544070

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
5542547AT501983.771.00START_GAINED(|||None|Vigan.05G075100.01), UPSTREAM(|1840||None|Vigan.05G075000.01), UPSTREAM(|4416||None|Vigan.05G075200.01), UTR_5_PRIME(|219||None|Vigan.05G075100.01)Vigna nepalensis
5542622TC431625.771.00UPSTREAM(|1915||None|Vigan.05G075000.01), UPSTREAM(|4341||None|Vigan.05G075200.01), UTR_5_PRIME(|144||None|Vigan.05G075100.01)Vigna nepalensis
5542736GC472055.771.00UPSTREAM(|2029||None|Vigan.05G075000.01), UPSTREAM(|4227||None|Vigan.05G075200.01), UTR_5_PRIME(|30||None|Vigan.05G075100.01)Vigna nepalensis
5542780AG481852.771.00SYNONYMOUS_CODING(SILENT|acA/acG|T5|None|Vigan.05G075100.01), UPSTREAM(|2073||None|Vigan.05G075000.01), UPSTREAM(|4183||None|Vigan.05G075200.01)Vigna nepalensis
5542884CA491904.771.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2177||None|Vigan.05G075000.01), UPSTREAM(|4079||None|Vigan.05G075200.01)Vigna nepalensis
5542981GA522342.771.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2274||None|Vigan.05G075000.01), UPSTREAM(|3982||None|Vigan.05G075200.01)Vigna nepalensis
5543092TC582303.771.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2385||None|Vigan.05G075000.01), UPSTREAM(|3871||None|Vigan.05G075200.01)Vigna nepalensis
5543213TC642484.771.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2506||None|Vigan.05G075000.01), UPSTREAM(|3750||None|Vigan.05G075200.01)Vigna nepalensis
5543266TA642893.771.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2559||None|Vigan.05G075000.01), UPSTREAM(|3697||None|Vigan.05G075200.01)Vigna nepalensis
5543287AG622688.771.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2580||None|Vigan.05G075000.01), UPSTREAM(|3676||None|Vigan.05G075200.01)Vigna nepalensis
5543338GT592369.771.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2631||None|Vigan.05G075000.01), UPSTREAM(|3625||None|Vigan.05G075200.01)Vigna nepalensis
5543753CT491981.771.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|3046||None|Vigan.05G075000.01), UPSTREAM(|3210||None|Vigan.05G075200.01)Vigna nepalensis
5543957AG572297.771.00UPSTREAM(|3006||None|Vigan.05G075200.01), UPSTREAM(|3250||None|Vigan.05G075000.01), UTR_3_PRIME(|18||None|Vigan.05G075100.01)Vigna nepalensis
5543990TC522061.771.00UPSTREAM(|2973||None|Vigan.05G075200.01), UPSTREAM(|3283||None|Vigan.05G075000.01), UTR_3_PRIME(|51||None|Vigan.05G075100.01)Vigna nepalensis
5544007AG512004.771.00UPSTREAM(|2956||None|Vigan.05G075200.01), UPSTREAM(|3300||None|Vigan.05G075000.01), UTR_3_PRIME(|68||None|Vigan.05G075100.01)Vigna nepalensis
5544058CT592192.771.00UPSTREAM(|2905||None|Vigan.05G075200.01), UPSTREAM(|3351||None|Vigan.05G075000.01), UTR_3_PRIME(|119||None|Vigan.05G075100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
5542530GGT451180.730.96UPSTREAM(|1824||None|Vigan.05G075000.01), UPSTREAM(|4432||None|Vigan.05G075200.01), UTR_5_PRIME(|235||None|Vigan.05G075100.01)Vigna nepalensis
5542675GTAG361250.730.97UPSTREAM(|1969||None|Vigan.05G075000.01), UPSTREAM(|4287||None|Vigan.05G075200.01), UTR_5_PRIME(|89||None|Vigan.05G075100.01)Vigna nepalensis
5542727TTA431897.731.00UPSTREAM(|2021||None|Vigan.05G075000.01), UPSTREAM(|4235||None|Vigan.05G075200.01), UTR_5_PRIME(|38||None|Vigan.05G075100.01)Vigna nepalensis
5542900CCT451296.730.98INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2194||None|Vigan.05G075000.01), UPSTREAM(|4062||None|Vigan.05G075200.01)Vigna nepalensis
5542970CAC522289.731.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2264||None|Vigan.05G075000.01), UPSTREAM(|3992||None|Vigan.05G075200.01)Vigna nepalensis
5543017TAT441531.731.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2311||None|Vigan.05G075000.01), UPSTREAM(|3945||None|Vigan.05G075200.01)Vigna nepalensis
5543244CCTG642812.731.00INTRON(|||None|Vigan.05G075100.01), UPSTREAM(|2538||None|Vigan.05G075000.01), UPSTREAM(|3718||None|Vigan.05G075200.01)Vigna nepalensis