Variant information

Chr05:4575269 - 4577728

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
4575545TA562302.771.00DOWNSTREAM(|2349||None|Vigan.05G063200.01), DOWNSTREAM(|2756||None|Vigan.05G063400.01), START_LOST(MISSENSE|aTg/aAg|M1K|None|Vigan.05G063300.01), UPSTREAM(|2756||None|Vigan.05G063500.01)Vigna nepalensis
4576479CA582351.771.00DOWNSTREAM(|1822||None|Vigan.05G063400.01), DOWNSTREAM(|3283||None|Vigan.05G063200.01), NON_SYNONYMOUS_CODING(MISSENSE|cCg/cAg|P67Q|None|Vigan.05G063300.01), UPSTREAM(|1822||None|Vigan.05G063500.01)Vigna nepalensis
4576944TC622327.771.00DOWNSTREAM(|1357||None|Vigan.05G063400.01), DOWNSTREAM(|3748||None|Vigan.05G063200.01), SYNONYMOUS_CODING(SILENT|acT/acC|T96|None|Vigan.05G063300.01), UPSTREAM(|1357||None|Vigan.05G063500.01)Vigna nepalensis
4577067TC552184.771.00DOWNSTREAM(|1234||None|Vigan.05G063400.01), DOWNSTREAM(|3871||None|Vigan.05G063200.01), SYNONYMOUS_CODING(SILENT|gaT/gaC|D137|None|Vigan.05G063300.01), UPSTREAM(|1234||None|Vigan.05G063500.01)Vigna nepalensis
4577445GC381480.771.00DOWNSTREAM(|4249||None|Vigan.05G063200.01), DOWNSTREAM(|856||None|Vigan.05G063400.01), UPSTREAM(|856||None|Vigan.05G063500.01), UTR_3_PRIME(|42||None|Vigan.05G063300.01)Vigna nepalensis
4577471CT371415.771.00DOWNSTREAM(|4275||None|Vigan.05G063200.01), DOWNSTREAM(|830||None|Vigan.05G063400.01), UPSTREAM(|830||None|Vigan.05G063500.01), UTR_3_PRIME(|68||None|Vigan.05G063300.01)Vigna nepalensis
4577532AT482055.771.00DOWNSTREAM(|4336||None|Vigan.05G063200.01), DOWNSTREAM(|769||None|Vigan.05G063400.01), UPSTREAM(|769||None|Vigan.05G063500.01), UTR_3_PRIME(|129||None|Vigan.05G063300.01)Vigna nepalensis
4577541GC462014.771.00DOWNSTREAM(|4345||None|Vigan.05G063200.01), DOWNSTREAM(|760||None|Vigan.05G063400.01), UPSTREAM(|760||None|Vigan.05G063500.01), UTR_3_PRIME(|138||None|Vigan.05G063300.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
4576566CCAATTCCTAATAAAATTCATTTGAAAAC572488.731.00DOWNSTREAM(|1734||None|Vigan.05G063400.01), DOWNSTREAM(|3371||None|Vigan.05G063200.01), INTRON(|||None|Vigan.05G063300.01), UPSTREAM(|1734||None|Vigan.05G063500.01)Vigna nepalensis
4576726AAGGAAAAATGTTCTCTTTACCGAATTGTCACCTTACA502233.731.00DOWNSTREAM(|1574||None|Vigan.05G063400.01), DOWNSTREAM(|3531||None|Vigan.05G063200.01), INTRON(|||None|Vigan.05G063300.01), UPSTREAM(|1574||None|Vigan.05G063500.01)Vigna nepalensis
4576778ATA451989.731.00DOWNSTREAM(|1522||None|Vigan.05G063400.01), DOWNSTREAM(|3583||None|Vigan.05G063200.01), INTRON(|||None|Vigan.05G063300.01), UPSTREAM(|1522||None|Vigan.05G063500.01)Vigna nepalensis