Variant information

Chr05:3542535 - 3545889

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3542539CT441764.771.00UPSTREAM(|2187||None|Vigan.05G050000.01), UPSTREAM(|4711||None|Vigan.05G050200.01), UTR_5_PRIME(|255||None|Vigan.05G050100.01)Vigna nepalensis
3542641TC491875.771.00UPSTREAM(|2289||None|Vigan.05G050000.01), UPSTREAM(|4609||None|Vigan.05G050200.01), UTR_5_PRIME(|153||None|Vigan.05G050100.01)Vigna nepalensis
3543037CA682569.771.00NON_SYNONYMOUS_CODING(MISSENSE|Ctg/Atg|L82M|None|Vigan.05G050100.01), UPSTREAM(|2685||None|Vigan.05G050000.01), UPSTREAM(|4213||None|Vigan.05G050200.01)Vigna nepalensis
3543126AG542186.771.00SYNONYMOUS_CODING(SILENT|gaA/gaG|E111|None|Vigan.05G050100.01), UPSTREAM(|2774||None|Vigan.05G050000.01), UPSTREAM(|4124||None|Vigan.05G050200.01)Vigna nepalensis
3543548CT502203.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|3196||None|Vigan.05G050000.01), UPSTREAM(|3702||None|Vigan.05G050200.01)Vigna nepalensis
3543578CT481876.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|3226||None|Vigan.05G050000.01), UPSTREAM(|3672||None|Vigan.05G050200.01)Vigna nepalensis
3543815GA361408.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|3435||None|Vigan.05G050200.01), UPSTREAM(|3463||None|Vigan.05G050000.01)Vigna nepalensis
3544092GA622751.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|3158||None|Vigan.05G050200.01), UPSTREAM(|3740||None|Vigan.05G050000.01)Vigna nepalensis
3544093GT612751.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|3157||None|Vigan.05G050200.01), UPSTREAM(|3741||None|Vigan.05G050000.01)Vigna nepalensis
3544519GC461927.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|2731||None|Vigan.05G050200.01), UPSTREAM(|4167||None|Vigan.05G050000.01)Vigna nepalensis
3544701GC562207.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|2549||None|Vigan.05G050200.01), UPSTREAM(|4349||None|Vigan.05G050000.01)Vigna nepalensis
3545081AG481917.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|2169||None|Vigan.05G050200.01), UPSTREAM(|4729||None|Vigan.05G050000.01)Vigna nepalensis
3545129TC491999.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|2121||None|Vigan.05G050200.01), UPSTREAM(|4777||None|Vigan.05G050000.01)Vigna nepalensis
3545350TC552193.771.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|1900||None|Vigan.05G050200.01), UPSTREAM(|4998||None|Vigan.05G050000.01)Vigna nepalensis
3545768AG461815.771.00UPSTREAM(|1482||None|Vigan.05G050200.01), UTR_3_PRIME(|95||None|Vigan.05G050100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3543547GGGGA472194.731.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|3196||None|Vigan.05G050000.01), UPSTREAM(|3702||None|Vigan.05G050200.01)Vigna nepalensis
3544150CAC572093.731.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|3099||None|Vigan.05G050200.01), UPSTREAM(|3799||None|Vigan.05G050000.01)Vigna nepalensis
3544604GGT491972.731.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|2645||None|Vigan.05G050200.01), UPSTREAM(|4253||None|Vigan.05G050000.01)Vigna nepalensis
3545380CTAC501913.731.00INTRON(|||None|Vigan.05G050100.01), UPSTREAM(|1869||None|Vigan.05G050200.01)Vigna nepalensis
3545807GGTAATAC431878.731.00UPSTREAM(|1442||None|Vigan.05G050200.01), UTR_3_PRIME(|135||None|Vigan.05G050100.01)Vigna nepalensis