Variant information

Chr05:3524004 - 3526828

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3524044CG642588.771.00DOWNSTREAM(|1039||None|Vigan.05G049600.01), DOWNSTREAM(|2808||None|Vigan.05G049800.01), DOWNSTREAM(|4309||None|Vigan.05G049500.01), UTR_3_PRIME(|205||None|Vigan.05G049700.01)Vigna nepalensis
3525528GC532079.771.00DOWNSTREAM(|1324||None|Vigan.05G049800.01), DOWNSTREAM(|2523||None|Vigan.05G049600.01), INTRON(|||None|Vigan.05G049700.01)Vigna nepalensis
3525694TA582459.771.00DOWNSTREAM(|1158||None|Vigan.05G049800.01), DOWNSTREAM(|2689||None|Vigan.05G049600.01), INTRON(|||None|Vigan.05G049700.01)Vigna nepalensis
3525863AC461909.771.00DOWNSTREAM(|2858||None|Vigan.05G049600.01), DOWNSTREAM(|989||None|Vigan.05G049800.01), INTRON(|||None|Vigan.05G049700.01)Vigna nepalensis
3525958GC612393.771.00DOWNSTREAM(|2953||None|Vigan.05G049600.01), DOWNSTREAM(|894||None|Vigan.05G049800.01), SYNONYMOUS_CODING(SILENT|gcC/gcG|A64|None|Vigan.05G049700.01)Vigna nepalensis
3526816AT602605.771.00DOWNSTREAM(|36||None|Vigan.05G049800.01), DOWNSTREAM(|3811||None|Vigan.05G049600.01), UTR_5_PRIME(|477||None|Vigan.05G049700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3526821GGT592565.731.00DOWNSTREAM(|30||None|Vigan.05G049800.01), DOWNSTREAM(|3817||None|Vigan.05G049600.01), UTR_5_PRIME(|483||None|Vigan.05G049700.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3526489(TCT)6(TCT)8472173.731.00DOWNSTREAM(|3485||None|Vigan.05G049600.01), DOWNSTREAM(|362||None|Vigan.05G049800.01), UTR_5_PRIME(|151||None|Vigan.05G049700.01)Vigna nepalensis