Variant information

Chr05:28243763 - 28248744

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
28244052CA572075.771.00SYNONYMOUS_CODING(SILENT|ggG/ggT|G365|None|Vigan.05G236800.01), UPSTREAM(|928||None|Vigan.05G236700.01)Vigna nepalensis
28244572AG652565.771.00SYNONYMOUS_CODING(SILENT|aaT/aaC|N355|None|Vigan.05G236800.01), UPSTREAM(|1448||None|Vigan.05G236700.01)Vigna nepalensis
28244856AG552250.771.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|1732||None|Vigan.05G236700.01)Vigna nepalensis
28245515CA622439.771.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|2391||None|Vigan.05G236700.01)Vigna nepalensis
28246038CT612762.771.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|2914||None|Vigan.05G236700.01)Vigna nepalensis
28246047GC622867.771.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|2923||None|Vigan.05G236700.01)Vigna nepalensis
28246148CA461792.771.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|3024||None|Vigan.05G236700.01)Vigna nepalensis
28246426GA542184.771.00SYNONYMOUS_CODING(SILENT|atC/atT|I100|None|Vigan.05G236800.01), UPSTREAM(|3302||None|Vigan.05G236700.01)Vigna nepalensis
28246480AG632523.771.00SYNONYMOUS_CODING(SILENT|tcT/tcC|S82|None|Vigan.05G236800.01), UPSTREAM(|3356||None|Vigan.05G236700.01)Vigna nepalensis
28246568CG582231.771.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|3444||None|Vigan.05G236700.01)Vigna nepalensis
28247486TC552191.771.00UPSTREAM(|4362||None|Vigan.05G236700.01), UTR_5_PRIME(|2||None|Vigan.05G236800.01)Vigna nepalensis
28247526AC522098.771.00UPSTREAM(|4402||None|Vigan.05G236700.01), UTR_5_PRIME(|42||None|Vigan.05G236800.01)Vigna nepalensis
28247727TC552205.771.00START_GAINED(|||None|Vigan.05G236800.01), UPSTREAM(|4603||None|Vigan.05G236700.01), UTR_5_PRIME(|243||None|Vigan.05G236800.01)Vigna nepalensis
28247760AC502008.771.00START_GAINED(|||None|Vigan.05G236800.01), UPSTREAM(|4636||None|Vigan.05G236700.01), UTR_5_PRIME(|276||None|Vigan.05G236800.01)Vigna nepalensis
28247861GA552102.771.00UPSTREAM(|4737||None|Vigan.05G236700.01), UTR_5_PRIME(|377||None|Vigan.05G236800.01)Vigna nepalensis
28248172GA441928.771.00START_GAINED(|||None|Vigan.05G236800.01), UTR_5_PRIME(|688||None|Vigan.05G236800.01)Vigna nepalensis
28248184CT451970.771.00UTR_5_PRIME(|700||None|Vigan.05G236800.01)Vigna nepalensis
28248218AG522335.771.00UTR_5_PRIME(|734||None|Vigan.05G236800.01)Vigna nepalensis
28248243AG512198.771.00UTR_5_PRIME(|759||None|Vigan.05G236800.01)Vigna nepalensis
28248277CG552239.771.00UTR_5_PRIME(|793||None|Vigan.05G236800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
28245466TTA582306.731.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|2343||None|Vigan.05G236700.01)Vigna nepalensis
28246168GGAA381556.731.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|3045||None|Vigan.05G236700.01)Vigna nepalensis
28246220TTG361291.730.92INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|3097||None|Vigan.05G236700.01)Vigna nepalensis
28246221AAGCTATTTCATTTTTATCTTGTTATTTTTCCCTTTCAAAGTACTTAGGGAGAAACTAGTCTACAAT341291.730.88INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|3098||None|Vigan.05G236700.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
28245737(AT)31(AT)4532339.731.00INTRON(|||None|Vigan.05G236800.01), UPSTREAM(|2614||None|Vigan.05G236700.01)Vigna nepalensis