Variant information

Chr05:23809602 - 23815505

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
23809866AC451705.771.00NON_SYNONYMOUS_CODING(MISSENSE|gAa/gCa|E51A|None|Vigan.05G222300.01)Vigna nepalensis
23810512GC522078.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23810574GA341404.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23810702AG572301.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23810748TC602766.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23810764CT672906.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23810881GA271142.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23810920GT391598.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23810956GA461907.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23811028AG461896.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23811122AT512237.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23811245TC592316.771.00SYNONYMOUS_CODING(SILENT|Ttg/Ctg|L140|None|Vigan.05G222300.01)Vigna nepalensis
23811963TA471767.770.96INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23812149AG471913.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813289CT11454.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813291CT9454.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813547GT572328.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813636GA582458.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813659AG532489.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813672CG532387.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813796CT471907.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813959AT502070.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23814018AG482131.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23814071TG451844.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23814148TA542253.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23814213CT501975.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23814286AG512021.771.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
23810539ATA381210.731.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23810855TAAAAAAT281125.731.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23811111GAAAAAG492152.731.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23811951TCT421689.730.98INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813003CCATT361612.731.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23814011GATATG462122.731.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23814021GGTTT482293.731.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
23810175(TA)18(TA)13411530.731.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis
23813269(AC)11(AC)310400.731.00INTRON(|||None|Vigan.05G222300.01)Vigna nepalensis