VIGGS:Variant information

Chr05:16780760 - 16784044

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
16780810	T	C	50	1909.77	1.00	DOWNSTREAM(\|1393\|\|None\|Vigan.05G189900.01), UTR_3_PRIME(\|179\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781176	C	T	51	2313.77	1.00	DOWNSTREAM(\|1759\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781211	T	C	59	2402.77	1.00	DOWNSTREAM(\|1794\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781251	C	T	66	2626.77	1.00	DOWNSTREAM(\|1834\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781286	C	T	76	3264.77	1.00	DOWNSTREAM(\|1869\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781305	G	A	73	3333.77	1.00	DOWNSTREAM(\|1888\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781416	T	A	45	1965.77	1.00	DOWNSTREAM(\|1999\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781475	A	T	45	1830.77	1.00	DOWNSTREAM(\|2058\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781757	A	T	65	2552.77	1.00	DOWNSTREAM(\|2340\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16782159	T	G	64	3116.77	1.00	DOWNSTREAM(\|2742\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16782166	T	C	62	2806.77	1.00	DOWNSTREAM(\|2749\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16783263	A	G	61	2372.77	1.00	DOWNSTREAM(\|3846\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16783404	G	T	53	2071.77	1.00	DOWNSTREAM(\|3987\|\|None\|Vigan.05G189900.01), NON_SYNONYMOUS_CODING(MISSENSE\|agC/agA\|S89R\|None\|Vigan.05G190000.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
16781158	T	TG	53	2348.73	1.00	DOWNSTREAM(\|1742\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781414	AT	A	45	1956.73	1.00	DOWNSTREAM(\|1998\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781431	C	CAT	45	2015.73	1.00	DOWNSTREAM(\|2015\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781514	C	CA	55	1895.73	1.00	DOWNSTREAM(\|2098\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16781742	AT	A	64	2248.73	1.00	DOWNSTREAM(\|2326\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16782155	C	CAA	66	3051.73	1.00	DOWNSTREAM(\|2739\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16782179	C	CACA	66	3104.73	1.00	DOWNSTREAM(\|2763\|\|None\|Vigan.05G189900.01), INTRON(\|\|\|None\|Vigan.05G190000.01)	Vigna nepalensis
16784026	G	GA	43	1303.73	1.00	DOWNSTREAM(\|4610\|\|None\|Vigan.05G189900.01), UTR_5_PRIME(\|357\|\|None\|Vigan.05G190000.01)	Vigna nepalensis