Variant information

Chr05:11886319 - 11888452

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
11886393GA23990.771.00DOWNSTREAM(|1216||None|Vigan.05G144900.01), UPSTREAM(|426||None|Vigan.05G145000.01), UTR_5_PRIME(|143||None|Vigan.05G145100.01)Vigna nepalensis
11886408GA241073.771.00DOWNSTREAM(|1231||None|Vigan.05G144900.01), UPSTREAM(|441||None|Vigan.05G145000.01), UTR_5_PRIME(|128||None|Vigan.05G145100.01)Vigna nepalensis
11886475CT321276.771.00DOWNSTREAM(|1298||None|Vigan.05G144900.01), UPSTREAM(|508||None|Vigan.05G145000.01), UTR_5_PRIME(|61||None|Vigan.05G145100.01)Vigna nepalensis
11886506TA411826.771.00DOWNSTREAM(|1329||None|Vigan.05G144900.01), UPSTREAM(|539||None|Vigan.05G145000.01), UTR_5_PRIME(|30||None|Vigan.05G145100.01)Vigna nepalensis
11886766AG612455.771.00DOWNSTREAM(|1589||None|Vigan.05G144900.01), INTRON(|||None|Vigan.05G145100.01), UPSTREAM(|799||None|Vigan.05G145000.01)Vigna nepalensis
11886797AG642817.771.00DOWNSTREAM(|1620||None|Vigan.05G144900.01), INTRON(|||None|Vigan.05G145100.01), UPSTREAM(|830||None|Vigan.05G145000.01)Vigna nepalensis
11886802TA612705.771.00DOWNSTREAM(|1625||None|Vigan.05G144900.01), INTRON(|||None|Vigan.05G145100.01), UPSTREAM(|835||None|Vigan.05G145000.01)Vigna nepalensis
11886824GT491942.771.00DOWNSTREAM(|1647||None|Vigan.05G144900.01), INTRON(|||None|Vigan.05G145100.01), UPSTREAM(|857||None|Vigan.05G145000.01)Vigna nepalensis
11887603AC612468.771.00DOWNSTREAM(|2426||None|Vigan.05G144900.01), UPSTREAM(|1636||None|Vigan.05G145000.01), UTR_3_PRIME(|49||None|Vigan.05G145100.01)Vigna nepalensis
11887867AC602425.771.00DOWNSTREAM(|2690||None|Vigan.05G144900.01), UPSTREAM(|1900||None|Vigan.05G145000.01), UTR_3_PRIME(|313||None|Vigan.05G145100.01)Vigna nepalensis
11887948GC762858.771.00DOWNSTREAM(|2771||None|Vigan.05G144900.01), UPSTREAM(|1981||None|Vigan.05G145000.01), UTR_3_PRIME(|394||None|Vigan.05G145100.01)Vigna nepalensis
11888081TG632510.771.00DOWNSTREAM(|2904||None|Vigan.05G144900.01), UPSTREAM(|2114||None|Vigan.05G145000.01), UTR_3_PRIME(|527||None|Vigan.05G145100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
11886509CGAGAGCGAGAC401783.731.00DOWNSTREAM(|1333||None|Vigan.05G144900.01), UPSTREAM(|543||None|Vigan.05G145000.01), UTR_5_PRIME(|17||None|Vigan.05G145100.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
11887212(TTA)10(TTA)13291533.731.00DOWNSTREAM(|2036||None|Vigan.05G144900.01), INTRON(|||None|Vigan.05G145100.01), UPSTREAM(|1246||None|Vigan.05G145000.01)Vigna nepalensis