Variant information

Chr05:11485765 - 11490418

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
11485954GT391486.771.00NON_SYNONYMOUS_CODING(MISSENSE|gaG/gaT|E7D|None|Vigan.05G140700.01)Vigna nepalensis
11486940TA562285.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487244GT541985.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487278TC502002.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487508GC931476.770.48INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487660CG961494.770.45INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487729AG821551.770.50INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487733CA841515.770.48INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487764CT801036.770.38INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487768AT751722.770.63INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487774AT76908.770.33INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487896AG783210.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11487933AG753078.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11488160TC752958.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11488726TA532111.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11489121CA612336.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11489172GT712744.771.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11489556CT65333.770.23INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11489618TG851584.770.45SYNONYMOUS_CODING(SILENT|tcT/tcG|S249|None|Vigan.05G140700.01)Vigna nepalensis
11489620CT881623.770.45NON_SYNONYMOUS_CODING(MISSENSE|gCt/gTt|A250V|None|Vigan.05G140700.01)Vigna nepalensis
11489628CT871458.770.44STOP_GAINED(NONSENSE|Cag/Tag|Q253*|None|Vigan.05G140700.01)Vigna nepalensis
11489646AC871371.770.43NON_SYNONYMOUS_CODING(MISSENSE|Agc/Cgc|S259R|None|Vigan.05G140700.01)Vigna nepalensis
11489666GA941566.770.44SYNONYMOUS_CODING(SILENT|ggG/ggA|G265|None|Vigan.05G140700.01)Vigna nepalensis
11489672GA971453.770.40SYNONYMOUS_CODING(SILENT|caG/caA|Q267|None|Vigan.05G140700.01)Vigna nepalensis
11489706GC91736.770.32NON_SYNONYMOUS_CODING(MISSENSE|Gat/Cat|D279H|None|Vigan.05G140700.01)Vigna nepalensis
11489725CT811039.770.37NON_SYNONYMOUS_CODING(MISSENSE|cCg/cTg|P285L|None|Vigan.05G140700.01)Vigna nepalensis
11489746CG78798.770.28NON_SYNONYMOUS_CODING(MISSENSE|aCa/aGa|T292R|None|Vigan.05G140700.01)Vigna nepalensis
11489753CT84883.770.31SYNONYMOUS_CODING(SILENT|gcC/gcT|A294|None|Vigan.05G140700.01)Vigna nepalensis
11489757AG84882.770.30DOWNSTREAM(|5000||None|Vigan.05G140800.01), NON_SYNONYMOUS_CODING(MISSENSE|Aag/Gag|K296E|None|Vigan.05G140700.01)Vigna nepalensis
11489787GA71326.770.18DOWNSTREAM(|4970||None|Vigan.05G140800.01), UTR_3_PRIME(|7||None|Vigan.05G140700.01)Vigna nepalensis
11489912CA672757.771.00DOWNSTREAM(|4845||None|Vigan.05G140800.01), UTR_3_PRIME(|132||None|Vigan.05G140700.01)Vigna nepalensis
11490346AG502267.771.00DOWNSTREAM(|4411||None|Vigan.05G140800.01), UTR_3_PRIME(|566||None|Vigan.05G140700.01)Vigna nepalensis
11490351TG522292.771.00DOWNSTREAM(|4406||None|Vigan.05G140800.01), UTR_3_PRIME(|571||None|Vigan.05G140700.01)Vigna nepalensis
11490409GC512305.771.00DOWNSTREAM(|4348||None|Vigan.05G140800.01), UTR_3_PRIME(|629||None|Vigan.05G140700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
11486687GTG531461.731.00INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11488259AATT592407.730.97INTRON(|||None|Vigan.05G140700.01)Vigna nepalensis
11489715CCAAAG831169.730.41FRAME_SHIFT(|cag/cAAAGag|Q282QR?|None|Vigan.05G140700.01)Vigna nepalensis
11489793TTA70282.730.16DOWNSTREAM(|4963||None|Vigan.05G140800.01), UTR_3_PRIME(|14||None|Vigan.05G140700.01)Vigna nepalensis