VIGGS:Variant information

Chr05:1076556 - 1089780

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
1076956	A	G	18	438.77	0.61	DOWNSTREAM(\|2985\|\|None\|Vigan.05G016700.01), UTR_5_PRIME(\|131\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1076961	G	T	20	473.77	0.65	DOWNSTREAM(\|2990\|\|None\|Vigan.05G016700.01), UTR_5_PRIME(\|126\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077015	T	G	27	247.77	0.30	DOWNSTREAM(\|3044\|\|None\|Vigan.05G016700.01), UTR_5_PRIME(\|72\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077047	T	C	25	113.77	0.20	DOWNSTREAM(\|3076\|\|None\|Vigan.05G016700.01), UTR_5_PRIME(\|40\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077048	A	G	24	1075.77	1.00	DOWNSTREAM(\|3077\|\|None\|Vigan.05G016700.01), START_GAINED(\|\|\|None\|Vigan.05G016900.01), UTR_5_PRIME(\|39\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077055	C	T	23	742.77	0.78	DOWNSTREAM(\|3084\|\|None\|Vigan.05G016700.01), UTR_5_PRIME(\|32\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077098	A	G	18	652.77	1.00	DOWNSTREAM(\|3127\|\|None\|Vigan.05G016700.01), SYNONYMOUS_CODING(SILENT\|gtA/gtG\|V4\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077176	G	A	75	864.77	0.39	DOWNSTREAM(\|3205\|\|None\|Vigan.05G016700.01), SYNONYMOUS_CODING(SILENT\|caG/caA\|Q30\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077257	G	T	53	599.77	0.38	DOWNSTREAM(\|3286\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077277	C	A	33	354.77	0.39	DOWNSTREAM(\|3306\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077281	G	C	29	1140.77	1.00	DOWNSTREAM(\|3310\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077319	G	A	28	459.77	0.54	DOWNSTREAM(\|3348\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077329	T	C	28	363.77	0.46	DOWNSTREAM(\|3358\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077382	T	A	45	1709.77	1.00	DOWNSTREAM(\|3411\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077485	C	T	27	385.77	0.52	DOWNSTREAM(\|3514\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077548	T	C	33	682.77	0.55	DOWNSTREAM(\|3577\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077554	G	T	33	682.77	0.55	DOWNSTREAM(\|3583\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077602	C	T	18	264.77	0.61	DOWNSTREAM(\|3631\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077629	A	C	16	244.77	0.62	DOWNSTREAM(\|3658\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077702	G	T	18	322.77	0.50	DOWNSTREAM(\|3731\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077712	T	C	16	319.77	0.56	DOWNSTREAM(\|3741\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077716	C	G	17	729.77	1.00	DOWNSTREAM(\|3745\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077726	T	C	16	238.77	0.44	DOWNSTREAM(\|3755\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077728	T	A	16	238.77	0.44	DOWNSTREAM(\|3757\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077736	T	C	15	238.77	0.47	DOWNSTREAM(\|3765\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077753	C	T	16	238.77	0.44	DOWNSTREAM(\|3782\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077780	C	T	14	196.77	0.36	DOWNSTREAM(\|3809\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077799	G	A	18	252.77	0.44	DOWNSTREAM(\|3828\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077830	A	G	23	187.77	0.30	DOWNSTREAM(\|3859\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077903	C	A	52	796.77	0.48	DOWNSTREAM(\|3932\|\|None\|Vigan.05G016700.01), NON_SYNONYMOUS_CODING(MISSENSE\|Ctt/Att\|L43I\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077963	T	C	87	1706.77	0.53	DOWNSTREAM(\|3992\|\|None\|Vigan.05G016700.01), NON_SYNONYMOUS_CODING(MISSENSE\|Ttt/Ctt\|F63L\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077981	A	G	100	1858.77	0.51	DOWNSTREAM(\|4010\|\|None\|Vigan.05G016700.01), NON_SYNONYMOUS_CODING(MISSENSE\|Agt/Ggt\|S69G\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078026	C	G	67	1508.77	0.60	DOWNSTREAM(\|4055\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078039	C	A	56	1352.77	0.61	DOWNSTREAM(\|4068\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078056	A	G	50	2088.77	1.00	DOWNSTREAM(\|4085\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078101	C	G	43	295.77	0.28	DOWNSTREAM(\|4130\|\|None\|Vigan.05G016700.01), NON_SYNONYMOUS_CODING(MISSENSE\|gaC/gaG\|D82E\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078140	T	A	61	1074.77	0.62	DOWNSTREAM(\|4169\|\|None\|Vigan.05G016700.01), SYNONYMOUS_CODING(SILENT\|acT/acA\|T95\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078235	A	T	35	828.77	0.66	DOWNSTREAM(\|4264\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078242	C	T	31	1324.77	1.00	DOWNSTREAM(\|4271\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078260	A	G	33	277.77	0.27	DOWNSTREAM(\|4289\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078285	A	T	26	547.77	0.73	DOWNSTREAM(\|4314\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078336	G	C	8	330.78	1.00	DOWNSTREAM(\|4365\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078440	C	T	16	365.77	0.81	DOWNSTREAM(\|4469\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078502	C	T	15	79.77	0.27	DOWNSTREAM(\|4531\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078540	T	C	22	334.77	0.36	DOWNSTREAM(\|4569\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078553	G	A	29	319.77	0.34	DOWNSTREAM(\|4582\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078590	T	G	32	374.77	0.38	DOWNSTREAM(\|4619\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078613	C	T	38	1597.77	1.00	DOWNSTREAM(\|4642\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078624	C	T	44	731.77	0.43	DOWNSTREAM(\|4653\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078650	T	G	45	823.77	0.49	DOWNSTREAM(\|4679\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078658	C	T	42	769.77	0.50	DOWNSTREAM(\|4687\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078677	A	C	49	771.77	0.49	DOWNSTREAM(\|4706\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078752	C	T	59	986.77	0.49	DOWNSTREAM(\|4781\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078801	T	A	57	918.77	0.49	DOWNSTREAM(\|4830\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078813	G	C	48	766.77	0.48	DOWNSTREAM(\|4842\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1079118	A	C	22	836.8	0.91	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1079292	A	G	10	347.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1079304	T	G	25	612.77	0.84	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084135	G	A	13	196.77	0.62	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084269	G	T	54	626.77	0.48	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084295	T	C	40	367.77	0.42	SYNONYMOUS_CODING(SILENT\|ctT/ctC\|L102\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084307	T	A	36	470.77	0.53	NON_SYNONYMOUS_CODING(MISSENSE\|aaT/aaA\|N106K\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084311	T	A	32	376.77	0.47	NON_SYNONYMOUS_CODING(MISSENSE\|Tct/Act\|S108T\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084438	G	A	17	235.77	0.41	INTRON(\|\|\|None\|Vigan.05G016900.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084442	T	A	18	821.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084443	T	C	19	821.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084485	T	C	47	774.77	0.57	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084536	T	C	45	777.77	0.58	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084554	A	T	33	714.77	0.58	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084558	C	T	27	717.77	0.63	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084571	G	A	14	637.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084612	G	C	16	276.77	0.50	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084618	G	A	15	241.77	0.47	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084649	C	T	16	103.77	0.31	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084681	T	A	14	105.77	0.29	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084707	C	A	17	55.77	0.18	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084728	A	C	26	157.77	0.23	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084729	T	A	26	157.77	0.23	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084792	A	G	61	504.77	0.26	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084793	A	T	62	501.77	0.26	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084798	G	C	60	498.77	0.27	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084806	G	T	66	497.77	0.26	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084843	G	A	65	1723.77	0.80	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084844	A	G	65	334.77	0.20	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084853	T	C	66	331.77	0.20	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084861	A	T	61	321.77	0.20	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084935	T	C	47	1793.77	0.98	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085195	T	C	54	2439.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085199	T	C	56	2176.77	0.95	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085234	T	G	47	1860.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085322	C	G	77	2450.77	0.88	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085394	G	C	65	216.77	0.15	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085410	C	T	65	508.77	0.26	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085442	A	C	79	803.77	0.34	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085463	T	A	82	3646.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085471	G	A	86	1630.77	0.50	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085472	C	G	85	1630.77	0.49	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085485	G	A	87	1366.77	0.48	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085510	G	C	98	1425.77	0.40	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085511	G	A	97	4121.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085544	G	C	98	4681.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085619	A	G	95	3849.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085631	G	T	92	1462.77	0.47	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085646	T	C	88	4009.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085659	G	A	90	1886.77	0.53	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085668	G	A	92	1848.77	0.52	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085780	A	G	71	244.77	0.15	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085784	A	G	72	201.77	0.14	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085787	C	T	72	204.77	0.14	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085816	G	A	58	2306.77	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1086266	C	T	61	2371.77	1.00	DOWNSTREAM(\|4830\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1086494	A	T	49	1944.77	1.00	DOWNSTREAM(\|4602\|\|None\|Vigan.05G017000.01), NON_SYNONYMOUS_CODING(MISSENSE\|cAt/cTt\|H178L\|None\|Vigan.05G016900.01)	Vigna nepalensis
1086648	T	C	55	2146.77	1.00	DOWNSTREAM(\|4448\|\|None\|Vigan.05G017000.01), NON_SYNONYMOUS_CODING(MISSENSE\|Tct/Cct\|S201P\|None\|Vigan.05G016900.01)	Vigna nepalensis
1086811	G	A	55	2243.77	1.00	DOWNSTREAM(\|4285\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1086849	T	C	59	2438.77	1.00	DOWNSTREAM(\|4247\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1086963	G	T	67	2623.77	1.00	DOWNSTREAM(\|4133\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1086989	G	C	69	2743.77	1.00	DOWNSTREAM(\|4107\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1087149	C	T	64	2783.77	1.00	DOWNSTREAM(\|3947\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1087285	T	G	54	2176.77	1.00	DOWNSTREAM(\|3811\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1088183	A	G	47	1873.77	1.00	DOWNSTREAM(\|2913\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1088260	A	C	53	2181.77	1.00	DOWNSTREAM(\|2836\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1088852	G	T	40	1605.77	1.00	DOWNSTREAM(\|2244\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1088917	C	A	52	2330.77	1.00	DOWNSTREAM(\|2179\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1088922	T	C	51	2254.77	1.00	DOWNSTREAM(\|2174\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
1076591	ACT	A	28	1013.73	1.00	DOWNSTREAM(\|2621\|\|None\|Vigan.05G016700.01), UPSTREAM(\|4637\|\|None\|Vigan.05G016800.01), UTR_5_PRIME(\|494\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1076938	A	ACGATTTTGGGCTGCAAAC	17	555.73	0.65	DOWNSTREAM(\|2968\|\|None\|Vigan.05G016700.01), UPSTREAM(\|4984\|\|None\|Vigan.05G016800.01), UTR_5_PRIME(\|148\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1076987	TGTCATGTAGATCAAGAGG	T	24	205.73	0.29	DOWNSTREAM(\|3017\|\|None\|Vigan.05G016700.01), UTR_5_PRIME(\|82\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077206	GTT	G	83	1241.73	0.41	DOWNSTREAM(\|3236\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077462	CAT	C	13	523.73	1.00	DOWNSTREAM(\|3492\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077532	CT	C	33	713.73	0.58	DOWNSTREAM(\|3562\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077558	TG	T	31	356.73	0.42	DOWNSTREAM(\|3588\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1077779	C	CG	13	187.73	0.31	DOWNSTREAM(\|3809\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078633	C	CCTG	49	800.73	0.45	DOWNSTREAM(\|4663\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078737	T	TA	56	825.73	0.48	DOWNSTREAM(\|4767\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1078885	A	AG	14	523.73	1.00	DOWNSTREAM(\|4915\|\|None\|Vigan.05G016700.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1079117	C	CT	21	914.73	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1079137	CT	C	17	518.73	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084699	C	CAA	14	496.73	0.79	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1084700	A	AAC	16	91.73	0.19	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085140	TA	T	64	1936.73	0.98	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085392	AT	A	67	207.73	0.15	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1085761	G	GTTAAA	76	3440.73	1.00	INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1086377	ATT	A	52	2246.73	1.00	DOWNSTREAM(\|4718\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1087152	CT	C	63	2789.73	1.00	DOWNSTREAM(\|3943\|\|None\|Vigan.05G017000.01), INTRON(\|\|\|None\|Vigan.05G016900.01)	Vigna nepalensis
1089426	C	CCTTTA	57	2826.73	1.00	DOWNSTREAM(\|1669\|\|None\|Vigan.05G017000.01), UTR_3_PRIME(\|4\|\|None\|Vigan.05G016900.01)	Vigna nepalensis