Variant information

Chr05:10742348 - 10748057

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
10742350CT682632.771.00UPSTREAM(|4651||None|Vigan.05G132600.01), UTR_3_PRIME(|324||None|Vigan.05G132700.01)Vigna nepalensis
10742367TG622520.771.00UPSTREAM(|4668||None|Vigan.05G132600.01), UTR_3_PRIME(|307||None|Vigan.05G132700.01)Vigna nepalensis
10742665TA521956.770.98UPSTREAM(|4966||None|Vigan.05G132600.01), UTR_3_PRIME(|9||None|Vigan.05G132700.01)Vigna nepalensis
10743773AG221051.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743784TA271227.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743801TA341438.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743827TG542422.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743839TC582657.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743848GA602616.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743879CT552182.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743950GT612764.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743964TC632893.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743978AC652896.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10743992TA542626.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744013GT492266.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744023AC411860.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744109TA231006.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744143CT21961.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744149TC22961.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744159CT251141.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744161AG261231.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744164CA261231.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744172CA231096.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744179GA241051.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744185CT241096.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744195TC251078.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744246AT211006.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744345TA241081.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744358GA281195.771.00INTRON(|||None|Vigan.05G132700.01), SPLICE_SITE_REGION(|||None|Vigan.05G132700.01)Vigna nepalensis
10744387AG24874.771.00SYNONYMOUS_CODING(SILENT|gaT/gaC|D284|None|Vigan.05G132700.01)Vigna nepalensis
10744558CA321390.771.00SYNONYMOUS_CODING(SILENT|ggG/ggT|G227|None|Vigan.05G132700.01)Vigna nepalensis
10744561TC331462.771.00SYNONYMOUS_CODING(SILENT|ttA/ttG|L226|None|Vigan.05G132700.01)Vigna nepalensis
10744920AC12511.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744995TA351400.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745045GA411809.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745046GC401809.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745106AG461646.770.98INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745693GA391816.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745717AG361556.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745756AG451988.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745760AG412079.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745789TA462006.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745854TA522079.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745898TA512259.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745907TA502207.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745943TA481963.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746384GA712950.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746426CA642693.770.97INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746432CG652758.770.97INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746435CT652800.770.97INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746436GA662800.770.97INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746490GA491859.770.90INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746498GA541954.770.91INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746541AT552183.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746622AT552164.771.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10747921TC532129.771.00UTR_5_PRIME(|23||None|Vigan.05G132700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
10742402TTAT462013.731.00UPSTREAM(|4704||None|Vigan.05G132600.01), UTR_3_PRIME(|270||None|Vigan.05G132700.01)Vigna nepalensis
10743831TTA552503.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744121TTA22952.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744129TAAT231042.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744152TAT231087.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744223TTCT251087.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744244CCCTTTA211042.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744245GGTT22997.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744252TTG19817.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744257AAAGTTTTTGGTAAGTATTTAAAATTGGACACCGCGGCTGTCCACTGAGAAT18817.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10744932GGCAGGA15682.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745686CCTAAAAAATATCTTTTA342002.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745688GGAGGTAAATTTGTAAATGAACGTGATGA412542.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745696ATA371759.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745777CCAGAAG482366.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10745892ATTA462205.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746300CTTCTC683080.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746304TTAA683080.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis
10746889GGATAATAGTATA502401.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
10744221(TTA)6(TTA)5251086.731.00INTRON(|||None|Vigan.05G132700.01)Vigna nepalensis