Variant information

Chr04:8984423 - 8989731

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
8984835GT471839.771.00NON_SYNONYMOUS_CODING(MISSENSE|aCt/aAt|T80N|None|Vigan.04G088200.01), UPSTREAM(|3496||None|Vigan.04G088100.01)Vigna nepalensis
8985465GA451767.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4126||None|Vigan.04G088100.01)Vigna nepalensis
8985514GT582430.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4175||None|Vigan.04G088100.01)Vigna nepalensis
8985669GA441638.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4330||None|Vigan.04G088100.01)Vigna nepalensis
8985971CG662762.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4632||None|Vigan.04G088100.01)Vigna nepalensis
8986007TG652574.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4668||None|Vigan.04G088100.01)Vigna nepalensis
8986133AG522092.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4794||None|Vigan.04G088100.01)Vigna nepalensis
8986406CT833424.771.00INTRON(|||None|Vigan.04G088200.01)Vigna nepalensis
8986473CT702855.771.00INTRON(|||None|Vigan.04G088200.01)Vigna nepalensis
8986521CA492083.771.00INTRON(|||None|Vigan.04G088200.01)Vigna nepalensis
8986578GA502005.771.00INTRON(|||None|Vigan.04G088200.01)Vigna nepalensis
8986674TG502052.771.00INTRON(|||None|Vigan.04G088200.01)Vigna nepalensis
8987048CT702698.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4860||None|Vigan.04G088300.01)Vigna nepalensis
8987685TC441748.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4223||None|Vigan.04G088300.01)Vigna nepalensis
8988044AT441728.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|3864||None|Vigan.04G088300.01)Vigna nepalensis
8988368CG552078.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|3540||None|Vigan.04G088300.01)Vigna nepalensis
8988959AC552147.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|2949||None|Vigan.04G088300.01)Vigna nepalensis
8989100CA361382.771.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|2808||None|Vigan.04G088300.01)Vigna nepalensis
8989520AG491867.771.00SYNONYMOUS_CODING(SILENT|caT/caC|H8|None|Vigan.04G088200.01), UPSTREAM(|2388||None|Vigan.04G088300.01)Vigna nepalensis
8989707CG521945.771.00UPSTREAM(|2201||None|Vigan.04G088300.01), UTR_5_PRIME(|164||None|Vigan.04G088200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
8984662CAC501544.731.00UPSTREAM(|3324||None|Vigan.04G088100.01), UTR_3_PRIME(|156||None|Vigan.04G088200.01)Vigna nepalensis
8984905TAT39988.731.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|3567||None|Vigan.04G088100.01)Vigna nepalensis
8985041TTCACAAGGCAG482211.731.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|3703||None|Vigan.04G088100.01)Vigna nepalensis
8985726AACC431813.731.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4388||None|Vigan.04G088100.01)Vigna nepalensis
8986170GAG421144.731.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4832||None|Vigan.04G088100.01)Vigna nepalensis
8987002CCAAA552513.731.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4905||None|Vigan.04G088300.01)Vigna nepalensis
8987016CCAA552190.731.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4891||None|Vigan.04G088300.01)Vigna nepalensis
8987339CCAT522266.731.00INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|4568||None|Vigan.04G088300.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
8989325(GT)10(GT)6331359.730.97INTRON(|||None|Vigan.04G088200.01), UPSTREAM(|2582||None|Vigan.04G088300.01)Vigna nepalensis