VIGGS:Variant information

Chr04:689218 - 693412

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
689419	G	A	17	560.77	1.00	DOWNSTREAM(\|4861\|\|None\|Vigan.04G007900.01), UTR_3_PRIME(\|471\|\|None\|Vigan.04G007800.01)	Vigna nepalensis
689431	G	A	17	386.77	0.41	DOWNSTREAM(\|4849\|\|None\|Vigan.04G007900.01), UTR_3_PRIME(\|459\|\|None\|Vigan.04G007800.01)	Vigna nepalensis
689434	C	A	17	227.77	0.29	DOWNSTREAM(\|4846\|\|None\|Vigan.04G007900.01), UTR_3_PRIME(\|456\|\|None\|Vigan.04G007800.01)	Vigna nepalensis
691139	T	C	51	2008.77	1.00	DOWNSTREAM(\|3141\|\|None\|Vigan.04G007900.01), INTRON(\|\|\|None\|Vigan.04G007800.01)	Vigna nepalensis
692650	C	A	38	809.77	0.92	DOWNSTREAM(\|1630\|\|None\|Vigan.04G007900.01), INTRON(\|\|\|None\|Vigan.04G007800.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
689232	G	GA	43	1149.73	1.00	UTR_3_PRIME(\|657\|\|None\|Vigan.04G007800.01)	Vigna nepalensis
690632	AT	A	56	1789.73	1.00	DOWNSTREAM(\|3647\|\|None\|Vigan.04G007900.01), INTRON(\|\|\|None\|Vigan.04G007800.01)	Vigna nepalensis
692171	T	TGACATTGTGCCCTAA	17	686.73	1.00	DOWNSTREAM(\|2108\|\|None\|Vigan.04G007900.01), INTRON(\|\|\|None\|Vigan.04G007800.01)	Vigna nepalensis
692565	T	TCA	54	2370.73	1.00	DOWNSTREAM(\|1714\|\|None\|Vigan.04G007900.01), INTRON(\|\|\|None\|Vigan.04G007800.01)	Vigna nepalensis
692931	G	GAGAT	25	1154.73	1.00	DOWNSTREAM(\|1348\|\|None\|Vigan.04G007900.01), INTRON(\|\|\|None\|Vigan.04G007800.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
692951	(AG)10	(AG)18	30	2017.73	1.00	DOWNSTREAM(\|1328\|\|None\|Vigan.04G007900.01), INTRON(\|\|\|None\|Vigan.04G007800.01)	Vigna nepalensis