VIGGS:Variant information

Chr04:6424818 - 6428225

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
6425258	C	T	58	2381.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6425299	A	C	67	2689.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6425865	G	T	49	2026.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6425945	G	A	41	1556.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426002	T	C	46	1773.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426068	C	G	55	2274.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426133	A	C	53	2052.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426179	G	A	48	2009.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426474	A	C	58	2278.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426528	C	G	57	2179.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426687	G	A	49	1894.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426729	G	C	50	2021.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426900	C	T	47	1861.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426945	A	G	51	1846.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6427042	T	C	40	1542.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6427108	A	C	55	2059.77	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6427619	T	A	43	1798.77	1.00	SYNONYMOUS_CODING(SILENT\|ccA/ccT\|P9\|None\|Vigan.04G067400.01)	Vigna nepalensis
6427869	A	G	54	2086.77	1.00	UTR_5_PRIME(\|224\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6427972	G	T	65	2866.77	1.00	UTR_5_PRIME(\|327\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6427982	T	C	59	2596.77	1.00	START_GAINED(\|\|\|None\|Vigan.04G067400.01), UTR_5_PRIME(\|337\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6428059	A	G	53	2212.77	1.00	UTR_5_PRIME(\|414\|\|None\|Vigan.04G067400.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
6425705	TA	T	52	1749.73	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis
6426933	A	AG	43	1411.73	1.00	INTRON(\|\|\|None\|Vigan.04G067400.01)	Vigna nepalensis