Variant information

Chr04:6038115 - 6041183

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
6038205TC491908.771.00UPSTREAM(|818||None|Vigan.04G063800.01), UTR_3_PRIME(|157||None|Vigan.04G063900.01)Vigna nepalensis
6038677CT632496.771.00INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1290||None|Vigan.04G063800.01)Vigna nepalensis
6038711GA622552.771.00INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1324||None|Vigan.04G063800.01)Vigna nepalensis
6038994AG612469.771.00INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1607||None|Vigan.04G063800.01)Vigna nepalensis
6039078CT70166.770.13INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1691||None|Vigan.04G063800.01)Vigna nepalensis
6039115AG87558.770.22INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1728||None|Vigan.04G063800.01)Vigna nepalensis
6039116GA86564.770.22INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1729||None|Vigan.04G063800.01)Vigna nepalensis
6039128TG82750.770.28INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1741||None|Vigan.04G063800.01)Vigna nepalensis
6039132TC85750.770.27INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1745||None|Vigan.04G063800.01)Vigna nepalensis
6039133AT85750.770.27INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1746||None|Vigan.04G063800.01)Vigna nepalensis
6039146CA912397.770.73INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1759||None|Vigan.04G063800.01)Vigna nepalensis
6039179CT78973.770.35INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1792||None|Vigan.04G063800.01)Vigna nepalensis
6039184CA78967.770.35INTRON(|||None|Vigan.04G063900.01), SPLICE_SITE_REGION(|||None|Vigan.04G063900.01), UPSTREAM(|1797||None|Vigan.04G063800.01)Vigna nepalensis
6039191GT761027.770.38NON_SYNONYMOUS_CODING(MISSENSE|Cag/Aag|Q256K|None|Vigan.04G063900.01), SPLICE_SITE_REGION(|||None|Vigan.04G063900.01), UPSTREAM(|1804||None|Vigan.04G063800.01)Vigna nepalensis
6039210CT74896.770.36SYNONYMOUS_CODING(SILENT|ggG/ggA|G249|None|Vigan.04G063900.01), UPSTREAM(|1823||None|Vigan.04G063800.01)Vigna nepalensis
6039325GT522264.770.98INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1938||None|Vigan.04G063800.01)Vigna nepalensis
6039349GA472248.770.98INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1962||None|Vigan.04G063800.01)Vigna nepalensis
6040119TG341506.771.00NON_SYNONYMOUS_CODING(MISSENSE|gAc/gCc|D175A|None|Vigan.04G063900.01), UPSTREAM(|2732||None|Vigan.04G063800.01)Vigna nepalensis
6040142AC401705.771.00NON_SYNONYMOUS_CODING(MISSENSE|atT/atG|I167M|None|Vigan.04G063900.01), UPSTREAM(|2755||None|Vigan.04G063800.01)Vigna nepalensis
6040254GA501925.771.00INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|2867||None|Vigan.04G063800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
6038269CAC441735.731.00UPSTREAM(|883||None|Vigan.04G063800.01), UTR_3_PRIME(|92||None|Vigan.04G063900.01)Vigna nepalensis
6038447AAACC582730.731.00INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1061||None|Vigan.04G063800.01)Vigna nepalensis
6039085CACAGAGC713231.731.00INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1699||None|Vigan.04G063800.01)Vigna nepalensis
6039101CATC79429.730.16INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1715||None|Vigan.04G063800.01)Vigna nepalensis
6039106AGTTA88456.730.19INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|1720||None|Vigan.04G063800.01)Vigna nepalensis
6039401TTA561975.731.00INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|2015||None|Vigan.04G063800.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
6039969(AC)14(AC)0351525.731.00INTRON(|||None|Vigan.04G063900.01), UPSTREAM(|2583||None|Vigan.04G063800.01)Vigna nepalensis