Variant information

Chr04:53549116 - 53555641

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53551276GA481923.771.00SYNONYMOUS_CODING(SILENT|aaC/aaT|N117|None|Vigan.04G429500.01), UTR_5_PRIME(|722||None|Vigan.04G429400.01)Vigna nepalensis
53552162GA521931.771.00START_GAINED(|||None|Vigan.04G429500.01), SYNONYMOUS_CODING(SILENT|ccG/ccA|P55|None|Vigan.04G429400.01), UTR_5_PRIME(|343||None|Vigan.04G429500.01)Vigna nepalensis
53552418TC501908.771.00DOWNSTREAM(|4813||None|Vigan.04G429600.01), SYNONYMOUS_CODING(SILENT|ggT/ggC|G109|None|Vigan.04G429400.01), UTR_5_PRIME(|599||None|Vigan.04G429500.01)Vigna nepalensis
53552591GA652597.771.00DOWNSTREAM(|4640||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|125||None|Vigan.04G429500.01)Vigna nepalensis
53553079CA712779.771.00DOWNSTREAM(|4152||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|613||None|Vigan.04G429500.01)Vigna nepalensis
53553138AG612399.771.00DOWNSTREAM(|4093||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|672||None|Vigan.04G429500.01)Vigna nepalensis
53553210TG622476.771.00DOWNSTREAM(|4021||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|744||None|Vigan.04G429500.01)Vigna nepalensis
53553514CA562207.771.00DOWNSTREAM(|3717||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|1048||None|Vigan.04G429500.01)Vigna nepalensis
53554013AT542116.771.00DOWNSTREAM(|3218||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|1547||None|Vigan.04G429500.01)Vigna nepalensis
53554025AC451765.771.00DOWNSTREAM(|3206||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|1559||None|Vigan.04G429500.01)Vigna nepalensis
53554310GT552257.771.00DOWNSTREAM(|2921||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|1844||None|Vigan.04G429500.01)Vigna nepalensis
53554409AC612446.771.00DOWNSTREAM(|2822||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|1943||None|Vigan.04G429500.01)Vigna nepalensis
53554615CA662666.771.00DOWNSTREAM(|2616||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|2149||None|Vigan.04G429500.01)Vigna nepalensis
53554645GC632425.771.00DOWNSTREAM(|2586||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|2179||None|Vigan.04G429500.01)Vigna nepalensis
53554863GA562157.771.00DOWNSTREAM(|2368||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|2397||None|Vigan.04G429500.01)Vigna nepalensis
53555075TG501979.771.00DOWNSTREAM(|2156||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|2609||None|Vigan.04G429500.01)Vigna nepalensis
53555265CT411650.771.00DOWNSTREAM(|1966||None|Vigan.04G429600.01), INTRON(|||None|Vigan.04G429400.01), UPSTREAM(|2799||None|Vigan.04G429500.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53551687GGA40909.730.97INTRON(|||None|Vigan.04G429500.01), UTR_5_PRIME(|310||None|Vigan.04G429400.01)Vigna nepalensis