VIGGS:Variant information

Chr04:52762418 - 52767207

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
52762584	C	T	58	2170.77	1.00	DOWNSTREAM(\|299\|\|None\|Vigan.04G418800.01), DOWNSTREAM(\|4374\|\|None\|Vigan.04G418700.01), UTR_3_PRIME(\|292\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52762983	A	G	62	2425.77	1.00	DOWNSTREAM(\|4773\|\|None\|Vigan.04G418700.01), DOWNSTREAM(\|698\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763044	A	T	64	2614.77	1.00	DOWNSTREAM(\|4834\|\|None\|Vigan.04G418700.01), DOWNSTREAM(\|759\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763196	A	G	47	1902.77	1.00	DOWNSTREAM(\|4986\|\|None\|Vigan.04G418700.01), DOWNSTREAM(\|911\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763279	G	T	58	2269.77	1.00	DOWNSTREAM(\|994\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763637	G	A	54	2292.77	1.00	DOWNSTREAM(\|1352\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763785	T	C	50	2034.77	1.00	DOWNSTREAM(\|1500\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763831	A	G	45	1837.77	1.00	DOWNSTREAM(\|1546\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763907	T	C	66	2609.77	1.00	DOWNSTREAM(\|1622\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763933	A	T	65	2626.77	1.00	DOWNSTREAM(\|1648\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52764387	A	G	61	2743.77	1.00	DOWNSTREAM(\|2102\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52764395	A	G	63	2861.77	1.00	DOWNSTREAM(\|2110\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52764571	G	C	47	1920.77	1.00	DOWNSTREAM(\|2286\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52764831	G	A	48	1917.77	1.00	DOWNSTREAM(\|2546\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52764971	T	C	51	2002.77	1.00	DOWNSTREAM(\|2686\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52765393	G	C	67	2617.77	1.00	DOWNSTREAM(\|3108\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52765493	C	T	64	2577.77	1.00	DOWNSTREAM(\|3208\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52765892	A	G	70	2693.77	1.00	DOWNSTREAM(\|3607\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52766424	T	A	43	1686.77	1.00	DOWNSTREAM(\|4139\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52766837	C	A	53	2052.77	1.00	DOWNSTREAM(\|4552\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
52762442	T	TCCA	52	2293.73	1.00	DOWNSTREAM(\|158\|\|None\|Vigan.04G418800.01), DOWNSTREAM(\|4233\|\|None\|Vigan.04G418700.01), UTR_3_PRIME(\|433\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52762776	AT	A	52	2046.73	1.00	DOWNSTREAM(\|4567\|\|None\|Vigan.04G418700.01), DOWNSTREAM(\|492\|\|None\|Vigan.04G418800.01), UTR_3_PRIME(\|99\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763960	TAAAATACC	T	51	2296.73	1.00	DOWNSTREAM(\|1676\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52763975	GAA	G	50	2182.73	1.00	DOWNSTREAM(\|1691\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52764299	AGAC	A	48	2085.73	1.00	DOWNSTREAM(\|2015\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52764580	TTATAA	T	50	2153.73	1.00	DOWNSTREAM(\|2296\|\|None\|Vigan.04G418800.01), INTRON(\|\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52767012	A	AATTGAG	48	2246.73	1.00	DOWNSTREAM(\|4728\|\|None\|Vigan.04G418800.01), UTR_5_PRIME(\|76\|\|None\|Vigan.04G418900.01)	Vigna nepalensis
52767113	C	CACAT	34	1569.73	1.00	DOWNSTREAM(\|4829\|\|None\|Vigan.04G418800.01), UTR_5_PRIME(\|177\|\|None\|Vigan.04G418900.01)	Vigna nepalensis