VIGGS:Variant information

Chr04:50826163 - 50829213

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
50826230	A	T	48	1857.77	1.00	UPSTREAM(\|1314\|\|None\|Vigan.04G394100.01), UTR_5_PRIME(\|42\|\|None\|Vigan.04G394200.01)	Vigna nepalensis
50826555	T	G	52	2067.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|1639\|\|None\|Vigan.04G394100.01)	Vigna nepalensis
50826652	C	T	49	1962.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|1736\|\|None\|Vigan.04G394100.01)	Vigna nepalensis
50826816	C	T	38	1722.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|1900\|\|None\|Vigan.04G394100.01)	Vigna nepalensis
50826817	A	G	39	1722.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|1901\|\|None\|Vigan.04G394100.01)	Vigna nepalensis
50826955	G	A	49	1852.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|2039\|\|None\|Vigan.04G394100.01)	Vigna nepalensis
50827541	A	C	68	2583.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|2625\|\|None\|Vigan.04G394100.01), UPSTREAM(\|4550\|\|None\|Vigan.04G394300.01)	Vigna nepalensis
50827771	G	A	57	2323.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|2855\|\|None\|Vigan.04G394100.01), UPSTREAM(\|4320\|\|None\|Vigan.04G394300.01)	Vigna nepalensis
50828071	A	G	65	2635.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|3155\|\|None\|Vigan.04G394100.01), UPSTREAM(\|4020\|\|None\|Vigan.04G394300.01)	Vigna nepalensis
50828280	G	A	46	1898.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|3364\|\|None\|Vigan.04G394100.01), UPSTREAM(\|3811\|\|None\|Vigan.04G394300.01)	Vigna nepalensis
50828427	G	A	41	1575.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|3511\|\|None\|Vigan.04G394100.01), UPSTREAM(\|3664\|\|None\|Vigan.04G394300.01)	Vigna nepalensis
50828751	A	T	59	2191.77	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|3340\|\|None\|Vigan.04G394300.01), UPSTREAM(\|3835\|\|None\|Vigan.04G394100.01)	Vigna nepalensis
50829127	C	G	62	2487.77	1.00	UPSTREAM(\|2964\|\|None\|Vigan.04G394300.01), UPSTREAM(\|4211\|\|None\|Vigan.04G394100.01), UTR_3_PRIME(\|196\|\|None\|Vigan.04G394200.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
50826484	C	CT	38	1240.73	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|1569\|\|None\|Vigan.04G394100.01)	Vigna nepalensis
50827030	TG	T	40	1524.73	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|2115\|\|None\|Vigan.04G394100.01)	Vigna nepalensis
50828721	A	AT	57	2115.73	1.00	INTRON(\|\|\|None\|Vigan.04G394200.01), UPSTREAM(\|3369\|\|None\|Vigan.04G394300.01), UPSTREAM(\|3806\|\|None\|Vigan.04G394100.01)	Vigna nepalensis