Variant information

Chr04:5003357 - 5013816

Filter



 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
5003889GA441704.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gtg/Atg|V124M|None|Vigan.04G054900.01)Vigna nepalensis
5005699AG512057.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5005784AT612459.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5005828AG592394.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5005959CT742994.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5006482GA401594.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5006575CT501941.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5006956CT602431.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5007366AG642535.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5007657CT491939.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5008990GC421561.771.00SYNONYMOUS_CODING(SILENT|gcG/gcC|A608|None|Vigan.04G054900.01)Vigna nepalensis
5009519TG481890.771.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5010681AG582291.771.00INTRON(|||None|Vigan.04G054900.01), SPLICE_SITE_REGION(|||None|Vigan.04G054900.01)Vigna nepalensis
5011862AG662613.771.00SYNONYMOUS_CODING(SILENT|gaA/gaG|E795|None|Vigan.04G054900.01)Vigna nepalensis
5013101AG622308.771.00NON_SYNONYMOUS_CODING(MISSENSE|Atg/Gtg|M820V|None|Vigan.04G054900.01)Vigna nepalensis
5013751CG652428.771.00UTR_3_PRIME(|322||None|Vigan.04G054900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
5006461TATCGT341474.731.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5011477TTCAAACCACTTCAGGAAAT672966.731.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis
5011664TTTGATACATTTA472329.731.00INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
5009689(AT)25(AT)1621597.730.76INTRON(|||None|Vigan.04G054900.01)Vigna nepalensis