Variant information

Chr04:48003319 - 48009653

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
48003422GA552206.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gca/Aca|A4T|None|Vigan.04G359900.01)Vigna nepalensis
48003466TC582526.771.00SYNONYMOUS_CODING(SILENT|atT/atC|I18|None|Vigan.04G359900.01)Vigna nepalensis
48003476TC512315.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004381GA592371.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gtg/Atg|V141M|None|Vigan.04G359900.01)Vigna nepalensis
48004551GT562177.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004569AT522220.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004621TC582287.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004677CT562208.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004847AG562183.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004940AG562261.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004954AG592397.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005373AC662390.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005534CT592675.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005563GA511933.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005610TA562201.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005624GC572179.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005728GA542341.771.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005876AT582308.771.00DOWNSTREAM(|4977||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|gtA/gtT|V300|None|Vigan.04G359900.01)Vigna nepalensis
48005945CG612404.771.00DOWNSTREAM(|4908||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006056TC421635.771.00DOWNSTREAM(|4797||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|Ttg/Ctg|L328|None|Vigan.04G359900.01)Vigna nepalensis
48006095TG452051.771.00DOWNSTREAM(|4758||None|Vigan.04G360000.01), NON_SYNONYMOUS_CODING(MISSENSE|Tcc/Gcc|S341A|None|Vigan.04G359900.01)Vigna nepalensis
48006097CT462051.771.00DOWNSTREAM(|4756||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|tcC/tcT|S341|None|Vigan.04G359900.01)Vigna nepalensis
48006322TG26993.771.00DOWNSTREAM(|4531||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|ctT/ctG|L387|None|Vigan.04G359900.01)Vigna nepalensis
48006413AG12479.771.00DOWNSTREAM(|4440||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006471TG331335.771.00DOWNSTREAM(|4382||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006560GC361375.771.00DOWNSTREAM(|4293||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006618CT341415.771.00DOWNSTREAM(|4235||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006638CT361460.771.00DOWNSTREAM(|4215||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006667CT421739.771.00DOWNSTREAM(|4186||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006824AC492001.771.00DOWNSTREAM(|4029||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006862CT521993.771.00DOWNSTREAM(|3991||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006906TA512052.771.00DOWNSTREAM(|3947||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006938CT472147.771.00DOWNSTREAM(|3915||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006944GA492192.771.00DOWNSTREAM(|3909||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007014CA532094.771.00DOWNSTREAM(|3839||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007046TC532291.771.00DOWNSTREAM(|3807||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007055TC472209.771.00DOWNSTREAM(|3798||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007064GC502155.771.00DOWNSTREAM(|3789||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007084CA501959.771.00DOWNSTREAM(|3769||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007123AT502371.771.00DOWNSTREAM(|3730||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|gcA/gcT|A423|None|Vigan.04G359900.01)Vigna nepalensis
48007132TA522393.771.00DOWNSTREAM(|3721||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|gcT/gcA|A426|None|Vigan.04G359900.01)Vigna nepalensis
48007137AG502261.771.00DOWNSTREAM(|3716||None|Vigan.04G360000.01), NON_SYNONYMOUS_CODING(MISSENSE|cAa/cGa|Q428R|None|Vigan.04G359900.01)Vigna nepalensis
48007410GA622323.771.00DOWNSTREAM(|3443||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01), SPLICE_SITE_REGION(|||None|Vigan.04G359900.01)Vigna nepalensis
48007468AG652664.771.00DOWNSTREAM(|3385||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007556TC592386.771.00DOWNSTREAM(|3297||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|ctT/ctC|L495|None|Vigan.04G359900.01)Vigna nepalensis
48007577GC662560.771.00DOWNSTREAM(|3276||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|tcG/tcC|S502|None|Vigan.04G359900.01)Vigna nepalensis
48007589AT682716.771.00DOWNSTREAM(|3264||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|ccA/ccT|P506|None|Vigan.04G359900.01)Vigna nepalensis
48007646AG552259.771.00DOWNSTREAM(|3207||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007757TG572316.771.00DOWNSTREAM(|3096||None|Vigan.04G360000.01), NON_SYNONYMOUS_CODING(MISSENSE|Tca/Gca|S528A|None|Vigan.04G359900.01)Vigna nepalensis
48007930GA501989.771.00DOWNSTREAM(|2923||None|Vigan.04G360000.01), SYNONYMOUS_CODING(SILENT|ttG/ttA|L555|None|Vigan.04G359900.01)Vigna nepalensis
48007952TA552225.771.00DOWNSTREAM(|2901||None|Vigan.04G360000.01), NON_SYNONYMOUS_CODING(MISSENSE|Tat/Aat|Y563N|None|Vigan.04G359900.01)Vigna nepalensis
48008051GA471920.771.00DOWNSTREAM(|2802||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48008361TC522137.771.00DOWNSTREAM(|2492||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48008511CG502063.771.00DOWNSTREAM(|2342||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48008822GC492035.771.00DOWNSTREAM(|2031||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48008837CT441747.771.00DOWNSTREAM(|2016||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48008961CA562313.771.00DOWNSTREAM(|1892||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48008997CT512329.771.00DOWNSTREAM(|1856||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48009005TC542547.771.00DOWNSTREAM(|1848||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48009006CT562508.771.00DOWNSTREAM(|1847||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48009018AG572196.771.00DOWNSTREAM(|1835||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48009039TC552109.771.00DOWNSTREAM(|1814||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48009059CG532453.771.00DOWNSTREAM(|1794||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48009139TA501961.771.00DOWNSTREAM(|1714||None|Vigan.04G360000.01), NON_SYNONYMOUS_CODING(MISSENSE|agT/agA|S696R|None|Vigan.04G359900.01)Vigna nepalensis
48009202CT532133.771.00DOWNSTREAM(|1651||None|Vigan.04G360000.01), UTR_3_PRIME(|3||None|Vigan.04G359900.01)Vigna nepalensis
48009360TC632477.771.00DOWNSTREAM(|1493||None|Vigan.04G360000.01), UTR_3_PRIME(|161||None|Vigan.04G359900.01)Vigna nepalensis
48009454AG511964.771.00DOWNSTREAM(|1399||None|Vigan.04G360000.01), UTR_3_PRIME(|255||None|Vigan.04G359900.01)Vigna nepalensis
48009511TC582670.771.00DOWNSTREAM(|1342||None|Vigan.04G360000.01), UTR_3_PRIME(|312||None|Vigan.04G359900.01)Vigna nepalensis
48009521CG602674.771.00DOWNSTREAM(|1332||None|Vigan.04G360000.01), UTR_3_PRIME(|322||None|Vigan.04G359900.01)Vigna nepalensis
48009587AG542211.771.00DOWNSTREAM(|1266||None|Vigan.04G360000.01), UTR_3_PRIME(|388||None|Vigan.04G359900.01)Vigna nepalensis
48009653AT622485.771.00DOWNSTREAM(|1200||None|Vigan.04G360000.01), UTR_3_PRIME(|454||None|Vigan.04G359900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
48003698GGTATA432050.731.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004570CTC502211.731.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48004764CCA521905.731.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005522TTCT602611.731.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48005719TTCTG492272.731.00INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006360AAATAT8322.751.00DOWNSTREAM(|4492||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48006398TTGTG855.730.38DOWNSTREAM(|4454||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007107TTA461683.731.00DOWNSTREAM(|3745||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007287GGTT512351.731.00DOWNSTREAM(|3565||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48007633CCAA522334.731.00DOWNSTREAM(|3219||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48009060CCACATACAAATAACTA522444.731.00DOWNSTREAM(|1792||None|Vigan.04G360000.01), INTRON(|||None|Vigan.04G359900.01)Vigna nepalensis
48009250GTCATG582564.731.00DOWNSTREAM(|1602||None|Vigan.04G360000.01), UTR_3_PRIME(|52||None|Vigan.04G359900.01)Vigna nepalensis
48009424GTTTG481958.730.98DOWNSTREAM(|1428||None|Vigan.04G360000.01), UTR_3_PRIME(|226||None|Vigan.04G359900.01)Vigna nepalensis
48009559GGAGAAAAGAAAAAT562886.731.00DOWNSTREAM(|1293||None|Vigan.04G360000.01), UTR_3_PRIME(|361||None|Vigan.04G359900.01)Vigna nepalensis