Variant information

Chr04:46822833 - 46830722

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
46823209GA441684.771.00NON_SYNONYMOUS_CODING(MISSENSE|aGt/aAt|S26N|None|Vigan.04G345900.01), UTR_3_PRIME(|1650||None|Vigan.04G346000.01)Vigna nepalensis
46823857GA542186.771.00DOWNSTREAM(|4770||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G345900.01), UTR_3_PRIME(|1002||None|Vigan.04G346000.01)Vigna nepalensis
46823957CA612415.771.00DOWNSTREAM(|4670||None|Vigan.04G346100.01), UTR_3_PRIME(|23||None|Vigan.04G345900.01), UTR_3_PRIME(|902||None|Vigan.04G346000.01)Vigna nepalensis
46824011AC562281.771.00DOWNSTREAM(|4616||None|Vigan.04G346100.01), UTR_3_PRIME(|77||None|Vigan.04G345900.01), UTR_3_PRIME(|848||None|Vigan.04G346000.01)Vigna nepalensis
46824120TC471936.771.00DOWNSTREAM(|4507||None|Vigan.04G346100.01), UTR_3_PRIME(|186||None|Vigan.04G345900.01), UTR_3_PRIME(|739||None|Vigan.04G346000.01)Vigna nepalensis
46824231CG411669.771.00DOWNSTREAM(|4396||None|Vigan.04G346100.01), UTR_3_PRIME(|297||None|Vigan.04G345900.01), UTR_3_PRIME(|628||None|Vigan.04G346000.01)Vigna nepalensis
46824583AT522034.771.00DOWNSTREAM(|4044||None|Vigan.04G346100.01), DOWNSTREAM(|74||None|Vigan.04G345900.01), UTR_3_PRIME(|276||None|Vigan.04G346000.01)Vigna nepalensis
46824633AG682714.771.00DOWNSTREAM(|124||None|Vigan.04G345900.01), DOWNSTREAM(|3994||None|Vigan.04G346100.01), UTR_3_PRIME(|226||None|Vigan.04G346000.01)Vigna nepalensis
46825449CT471693.770.98DOWNSTREAM(|3178||None|Vigan.04G346100.01), DOWNSTREAM(|940||None|Vigan.04G345900.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46825682AG431885.771.00DOWNSTREAM(|1173||None|Vigan.04G345900.01), DOWNSTREAM(|2945||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01), SPLICE_SITE_REGION(|||None|Vigan.04G346000.01)Vigna nepalensis
46825686CT411896.771.00DOWNSTREAM(|1177||None|Vigan.04G345900.01), DOWNSTREAM(|2941||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46825751TC532111.771.00DOWNSTREAM(|1242||None|Vigan.04G345900.01), DOWNSTREAM(|2876||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46826476CG772782.771.00DOWNSTREAM(|1967||None|Vigan.04G345900.01), DOWNSTREAM(|2151||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46826598AT612754.771.00DOWNSTREAM(|2029||None|Vigan.04G346100.01), DOWNSTREAM(|2089||None|Vigan.04G345900.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46827098TC612286.771.00DOWNSTREAM(|1529||None|Vigan.04G346100.01), DOWNSTREAM(|2589||None|Vigan.04G345900.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46827203TC562123.771.00DOWNSTREAM(|1424||None|Vigan.04G346100.01), DOWNSTREAM(|2694||None|Vigan.04G345900.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46827682AC532107.771.00DOWNSTREAM(|3173||None|Vigan.04G345900.01), DOWNSTREAM(|945||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46828089CT552045.771.00DOWNSTREAM(|3580||None|Vigan.04G345900.01), DOWNSTREAM(|538||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46828560TC421724.771.00DOWNSTREAM(|4051||None|Vigan.04G345900.01), DOWNSTREAM(|67||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01), UPSTREAM(|4633||None|Vigan.04G346200.01)Vigna nepalensis
46828806GA863424.771.00DOWNSTREAM(|4297||None|Vigan.04G345900.01), EXON(|||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01), UPSTREAM(|4387||None|Vigan.04G346200.01)Vigna nepalensis
46828819CT803243.771.00DOWNSTREAM(|4310||None|Vigan.04G345900.01), EXON(|||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01), UPSTREAM(|4374||None|Vigan.04G346200.01)Vigna nepalensis
46828960GA542162.771.00DOWNSTREAM(|4451||None|Vigan.04G345900.01), EXON(|||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01), UPSTREAM(|4233||None|Vigan.04G346200.01)Vigna nepalensis
46829119CA542308.771.00DOWNSTREAM(|4610||None|Vigan.04G345900.01), INTRON(|||None|Vigan.04G346000.01), UPSTREAM(|114||None|Vigan.04G346100.01), UPSTREAM(|4074||None|Vigan.04G346200.01)Vigna nepalensis
46829154TC622452.771.00DOWNSTREAM(|4645||None|Vigan.04G345900.01), INTRON(|||None|Vigan.04G346000.01), UPSTREAM(|149||None|Vigan.04G346100.01), UPSTREAM(|4039||None|Vigan.04G346200.01)Vigna nepalensis
46829547AG572276.771.00INTRON(|||None|Vigan.04G346000.01), UPSTREAM(|3646||None|Vigan.04G346200.01), UPSTREAM(|542||None|Vigan.04G346100.01)Vigna nepalensis
46829975GA451595.771.00SYNONYMOUS_CODING(SILENT|ggC/ggT|G98|None|Vigan.04G346000.01), UPSTREAM(|3218||None|Vigan.04G346200.01), UPSTREAM(|970||None|Vigan.04G346100.01)Vigna nepalensis
46830180AG542256.771.00INTRON(|||None|Vigan.04G346000.01), UPSTREAM(|1175||None|Vigan.04G346100.01), UPSTREAM(|3013||None|Vigan.04G346200.01)Vigna nepalensis
46830347TC331281.771.00NON_SYNONYMOUS_CODING(MISSENSE|aAg/aGg|K15R|None|Vigan.04G346000.01), UPSTREAM(|1342||None|Vigan.04G346100.01), UPSTREAM(|2846||None|Vigan.04G346200.01)Vigna nepalensis
46830661GA321256.771.00START_GAINED(|||None|Vigan.04G346000.01), UPSTREAM(|1656||None|Vigan.04G346100.01), UPSTREAM(|2532||None|Vigan.04G346200.01), UTR_5_PRIME(|271||None|Vigan.04G346000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
46825690AAT401780.731.00DOWNSTREAM(|1182||None|Vigan.04G345900.01), DOWNSTREAM(|2936||None|Vigan.04G346100.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis
46826594CCT612745.731.00DOWNSTREAM(|2032||None|Vigan.04G346100.01), DOWNSTREAM(|2086||None|Vigan.04G345900.01), INTRON(|||None|Vigan.04G346000.01)Vigna nepalensis