Variant information

Chr04:44990151 - 44996988

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
44990203AG552265.771.00START_GAINED(|||None|Vigan.04G327100.01), UPSTREAM(|2997||None|Vigan.04G327200.01), UTR_5_PRIME(|150||None|Vigan.04G327100.01)Vigna nepalensis
44990966TG522181.771.00INTRON(|||None|Vigan.04G327100.01), UPSTREAM(|2234||None|Vigan.04G327200.01)Vigna nepalensis
44991280GA381044.731.00INTRON(|||None|Vigan.04G327100.01), UPSTREAM(|1920||None|Vigan.04G327200.01)Vigna nepalensis
44991871TG572241.771.00INTRON(|||None|Vigan.04G327100.01), SPLICE_SITE_REGION(|||None|Vigan.04G327100.01), UPSTREAM(|1329||None|Vigan.04G327200.01)Vigna nepalensis
44993333GA77293.770.18EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993359CT71366.770.20EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993371GA64477.770.25EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993374CT63315.770.19EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993378TG,
A
462462.771.00EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993392GA,
C
512186.770.90EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993421TC68573.770.37EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993437CT81348.770.16EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993438CT80350.770.16EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993441CT82342.770.17EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993443AG,
T
723508.771.00EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993467CT100328.770.17EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993544TC66857.770.42INTRON(|||None|Vigan.04G327100.01), INTRON(|||None|Vigan.04G327200.01)Vigna nepalensis
44993609TC984044.771.00EXON(|||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01), SPLICE_SITE_REGION(|||None|Vigan.04G327200.01)Vigna nepalensis
44993706CT51382.770.37DOWNSTREAM(|19||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993728TC36606.770.44DOWNSTREAM(|41||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993733CT35523.770.43DOWNSTREAM(|46||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993742AG481103.770.67DOWNSTREAM(|55||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993743GA49184.770.18DOWNSTREAM(|56||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44993752GA65230.770.18DOWNSTREAM(|65||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994204TC421552.770.88DOWNSTREAM(|4599||None|Vigan.04G327300.01), DOWNSTREAM(|517||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994388AG511142.770.65DOWNSTREAM(|4415||None|Vigan.04G327300.01), DOWNSTREAM(|701||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994595CT44154.770.16DOWNSTREAM(|4208||None|Vigan.04G327300.01), DOWNSTREAM(|908||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994596CT48142.770.15DOWNSTREAM(|4207||None|Vigan.04G327300.01), DOWNSTREAM(|909||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994610AG37691.770.59DOWNSTREAM(|4193||None|Vigan.04G327300.01), DOWNSTREAM(|923||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994612TC38421.770.34DOWNSTREAM(|4191||None|Vigan.04G327300.01), DOWNSTREAM(|925||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994613CT33253.770.24DOWNSTREAM(|4190||None|Vigan.04G327300.01), DOWNSTREAM(|926||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994886TA76905.770.42DOWNSTREAM(|1199||None|Vigan.04G327200.01), DOWNSTREAM(|3917||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995107TC72992.770.35DOWNSTREAM(|1420||None|Vigan.04G327200.01), DOWNSTREAM(|3696||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995112TC792816.770.91DOWNSTREAM(|1425||None|Vigan.04G327200.01), DOWNSTREAM(|3691||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995404AG93209.770.13DOWNSTREAM(|1717||None|Vigan.04G327200.01), DOWNSTREAM(|3399||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995413GA77887.770.35DOWNSTREAM(|1726||None|Vigan.04G327200.01), DOWNSTREAM(|3390||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995428GA96210.770.12DOWNSTREAM(|1741||None|Vigan.04G327200.01), DOWNSTREAM(|3375||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995429CT93568.770.20DOWNSTREAM(|1742||None|Vigan.04G327200.01), DOWNSTREAM(|3374||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995441GT89259.770.13DOWNSTREAM(|1754||None|Vigan.04G327200.01), DOWNSTREAM(|3362||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995442GT76425.770.20DOWNSTREAM(|1755||None|Vigan.04G327200.01), DOWNSTREAM(|3361||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995444AC884086.771.00DOWNSTREAM(|1757||None|Vigan.04G327200.01), DOWNSTREAM(|3359||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995453GA87337.770.18DOWNSTREAM(|1766||None|Vigan.04G327200.01), DOWNSTREAM(|3350||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995462AG802310.770.70DOWNSTREAM(|1775||None|Vigan.04G327200.01), DOWNSTREAM(|3341||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995479CT702108.770.80DOWNSTREAM(|1792||None|Vigan.04G327200.01), DOWNSTREAM(|3324||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995483GA68294.770.18DOWNSTREAM(|1796||None|Vigan.04G327200.01), DOWNSTREAM(|3320||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995489GA65419.770.22DOWNSTREAM(|1802||None|Vigan.04G327200.01), DOWNSTREAM(|3314||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995513GT572050.770.91DOWNSTREAM(|1826||None|Vigan.04G327200.01), DOWNSTREAM(|3290||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995693GA491946.771.00DOWNSTREAM(|2006||None|Vigan.04G327200.01), DOWNSTREAM(|3110||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44996435AG481892.771.00DOWNSTREAM(|2368||None|Vigan.04G327300.01), DOWNSTREAM(|2748||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
44990315ATTA441719.731.00UPSTREAM(|2884||None|Vigan.04G327200.01), UTR_5_PRIME(|36||None|Vigan.04G327100.01)Vigna nepalensis
44990555CCTAACTCATC572415.731.00INTRON(|||None|Vigan.04G327100.01), UPSTREAM(|2644||None|Vigan.04G327200.01)Vigna nepalensis
44990826GTG381049.731.00INTRON(|||None|Vigan.04G327100.01), UPSTREAM(|2373||None|Vigan.04G327200.01)Vigna nepalensis
44994207TTA33638.730.70DOWNSTREAM(|4595||None|Vigan.04G327300.01), DOWNSTREAM(|521||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44994644CTC3277.730.16DOWNSTREAM(|4158||None|Vigan.04G327300.01), DOWNSTREAM(|958||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44995406GGA92597.730.22DOWNSTREAM(|1720||None|Vigan.04G327200.01), DOWNSTREAM(|3396||None|Vigan.04G327300.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis
44996505CCACACACACACACATATATATATATATAT11579.731.00DOWNSTREAM(|2297||None|Vigan.04G327300.01), DOWNSTREAM(|2819||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
44994327(AT)13(AT)7371541.731.00DOWNSTREAM(|4475||None|Vigan.04G327300.01), DOWNSTREAM(|641||None|Vigan.04G327200.01), INTRON(|||None|Vigan.04G327100.01)Vigna nepalensis