Variant information

Chr04:40158600 - 40160489

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
40158658CT291185.771.00UTR_3_PRIME(|174||None|Vigan.04G279600.01)Vigna nepalensis
40158672CA331363.771.00UTR_3_PRIME(|160||None|Vigan.04G279600.01)Vigna nepalensis
40158958TC391587.771.00SYNONYMOUS_CODING(SILENT|gaA/gaG|E249|None|Vigan.04G279600.01)Vigna nepalensis
40159621TC481957.771.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159770CA602635.771.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159774GC582689.771.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159781AT552574.771.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159783AC552548.771.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159784GT562503.771.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159908GA542212.771.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159927TC481985.771.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
40159058CTGCCACTGTTCGGTCCCGCACTATCCCTC502201.731.00FRAME_SHIFT(|agggatagtgcgggaccgaacagtggcagt/|RDSAGPNSGS207|None|Vigan.04G279600.01)Vigna nepalensis
40159666ATTGCATTCTTTTCAATTA401730.731.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159709AAAATTTATCTGACAATAAAATA532295.731.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40159827CCA451354.731.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis
40160327TTCTCTCCCT401746.731.00UTR_5_PRIME(|42||None|Vigan.04G279600.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
40160158(AG)9(AG)8431542.731.00INTRON(|||None|Vigan.04G279600.01)Vigna nepalensis