Variant information

Chr04:38452467 - 38457045

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
38452596TA522132.771.00UTR_5_PRIME(|618||None|Vigan.04G263900.01)Vigna nepalensis
38452949GA552182.771.00UPSTREAM(|4728||None|Vigan.04G264000.01), UTR_5_PRIME(|265||None|Vigan.04G263900.01)Vigna nepalensis
38453619TG321205.771.00NON_SYNONYMOUS_CODING(MISSENSE|Tcc/Gcc|S136A|None|Vigan.04G263900.01), UPSTREAM(|4058||None|Vigan.04G264000.01)Vigna nepalensis
38454620CT451974.771.00INTRON(|||None|Vigan.04G263900.01), UPSTREAM(|3057||None|Vigan.04G264000.01)Vigna nepalensis
38454621TA431974.771.00INTRON(|||None|Vigan.04G263900.01), UPSTREAM(|3056||None|Vigan.04G264000.01)Vigna nepalensis
38455218GA401421.771.00SYNONYMOUS_CODING(SILENT|ccG/ccA|P311|None|Vigan.04G263900.01), UPSTREAM(|2459||None|Vigan.04G264000.01)Vigna nepalensis
38455478GC411618.771.00NON_SYNONYMOUS_CODING(MISSENSE|gGg/gCg|G398A|None|Vigan.04G263900.01), UPSTREAM(|2199||None|Vigan.04G264000.01)Vigna nepalensis
38455719TC542188.771.00UPSTREAM(|1958||None|Vigan.04G264000.01), UTR_3_PRIME(|6||None|Vigan.04G263900.01)Vigna nepalensis
38455866GA411700.771.00UPSTREAM(|1811||None|Vigan.04G264000.01), UTR_3_PRIME(|153||None|Vigan.04G263900.01)Vigna nepalensis
38456427TC451763.771.00UPSTREAM(|1250||None|Vigan.04G264000.01), UTR_3_PRIME(|714||None|Vigan.04G263900.01)Vigna nepalensis
38456484CT441710.771.00UPSTREAM(|1193||None|Vigan.04G264000.01), UTR_3_PRIME(|771||None|Vigan.04G263900.01)Vigna nepalensis
38456699TA381545.771.00UPSTREAM(|978||None|Vigan.04G264000.01), UTR_3_PRIME(|986||None|Vigan.04G263900.01)Vigna nepalensis
38456879AC471917.771.00UPSTREAM(|798||None|Vigan.04G264000.01), UTR_3_PRIME(|1166||None|Vigan.04G263900.01)Vigna nepalensis
38457005TA592337.771.00UPSTREAM(|672||None|Vigan.04G264000.01), UTR_3_PRIME(|1292||None|Vigan.04G263900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
38452475TAT441220.731.00UTR_5_PRIME(|738||None|Vigan.04G263900.01)Vigna nepalensis
38452995CCAAACAA422046.731.00UPSTREAM(|4681||None|Vigan.04G264000.01), UTR_5_PRIME(|218||None|Vigan.04G263900.01)Vigna nepalensis
38453723GTG561433.730.98INTRON(|||None|Vigan.04G263900.01), UPSTREAM(|3953||None|Vigan.04G264000.01)Vigna nepalensis
38454052TTCT431598.731.00INTRON(|||None|Vigan.04G263900.01), UPSTREAM(|3624||None|Vigan.04G264000.01)Vigna nepalensis
38454134TTC602206.731.00INTRON(|||None|Vigan.04G263900.01), UPSTREAM(|3542||None|Vigan.04G264000.01)Vigna nepalensis
38455966TTTTTTTTCT21144.730.67UPSTREAM(|1710||None|Vigan.04G264000.01), UTR_3_PRIME(|254||None|Vigan.04G263900.01)Vigna nepalensis
38456776AATGGTGCT512428.731.00UPSTREAM(|900||None|Vigan.04G264000.01), UTR_3_PRIME(|1064||None|Vigan.04G263900.01)Vigna nepalensis