VIGGS:Variant information

Chr04:34762448 - 34765565

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Species
- Vigna nepalensis
Effect
- INTRON
- UTR_3_PRIME

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
34762757	T	A	52	2239.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762762	T	A	49	2253.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762765	T	A	48	2167.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762766	A	T	48	2122.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762897	A	C	32	1501.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762910	T	G	28	1231.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762918	A	G	25	1231.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762922	T	G	26	1166.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34763330	C	T	9	124.77	0.44	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34763344	G	T	9	124.77	0.44	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34763345	A	G	9	115.77	0.56	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34763360	C	T	6	43.77	0.33	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34763364	C	T	6	43.77	0.33	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764376	A	T	54	2188.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764498	A	C	55	2486.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764501	T	G	53	2488.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764528	T	A	58	2581.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764532	A	T	57	2609.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764592	T	C	63	2580.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764634	G	A	65	2681.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764684	G	T	74	3332.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764702	A	C	78	3571.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764971	T	G	59	2441.77	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34765306	A	C	45	1839.77	1.00	UTR_3_PRIME(\|111\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34765384	A	T	54	2307.77	1.00	UTR_3_PRIME(\|189\|\|None\|Vigan.04G235800.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
34762684	A	AC	55	2609.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762685	T	TA	56	2609.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762693	C	CTAAT	58	2735.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762854	CT	C	37	1440.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762888	GAACAGGT	G	32	1523.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762899	AGG	A	30	1402.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762912	AAAAT	A	27	1222.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34762925	AAAT	A	26	1157.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764439	TAACTCC	T	54	2425.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764447	TCTGGATGCAAGCCTG	T	53	2603.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764464	AGCTAGAGAC	A	55	2527.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764475	TCAG	T	55	2482.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764480	TTAGAAGAC	T	55	2482.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764490	TCTGGAA	T	54	2527.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764523	T	TA	51	2347.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764704	TGA	T	77	3562.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764707	TCGAG	T	76	3472.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764718	CATT	C	76	3517.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764724	TTTTC	T	77	3562.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764731	ATGTTT	A	75	3517.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764738	AGCTCCAGAT	A	73	3517.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34764749	ATTCAATACG	A	77	3429.73	1.00	INTRON(\|\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34765328	GAAAT	G	36	1532.73	1.00	UTR_3_PRIME(\|134\|\|None\|Vigan.04G235800.01)	Vigna nepalensis
34765451	A	AAGAAGAAAAT	56	2594.73	1.00	UTR_3_PRIME(\|257\|\|None\|Vigan.04G235800.01)	Vigna nepalensis